RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SHOC2Q9UQ13 582 aa26.26■■□□□ 1.79
SHOX2-201ENST00000389589 BRCC3P46736 316 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 SULT1E1P49888 294 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 FAM189BP81408 668 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 ROR1Q01973 937 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 C6orf118Q5T5N4 469 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 SLC9A4Q6AI14 798 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 PSTKQ8IV42 348 aaKnown RBP26.25■■□□□ 1.79
SHOX2-201ENST00000389589 NT5C3BQ969T7 300 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 PGM2Q96G03 612 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 SLC2A13Q96QE2 648 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 RTP3Q9BQQ7 232 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 CAPS2Q9BXY5 557 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 ROPN1BQ9BZX4 212 aaPredicted RBP26.25■■□□□ 1.79
SHOX2-201ENST00000389589 ROPN1Q9HAT0 212 aaPredicted RBP26.25■■□□□ 1.79
SHOX2-201ENST00000389589 CNGB3Q9NQW8 809 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 AP4E1Q9UPM8 1137 aa26.25■■□□□ 1.79
SHOX2-201ENST00000389589 L1CAMP32004 1257 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 CA9Q16790 459 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 INTS6LQ5JSJ4 861 aaKnown RBP26.24■■□□□ 1.79
SHOX2-201ENST00000389589 RAB41Q5JT25 222 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 RNASEH2BQ5TBB1 312 aaKnown RBP26.24■■□□□ 1.79
SHOX2-201ENST00000389589 FAM171BQ6P995 826 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 PLD5Q8N7P1 536 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 SUSD3Q96L08 255 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 ADAM33Q9BZ11 813 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 POPDC2Q9HBU9 364 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 PTPRDP23468 1912 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 I3L4J1 428 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 ZFXP17010 805 aaPredicted RBP26.24■■□□□ 1.79
SHOX2-201ENST00000389589 TYMPP19971 482 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 BCAR1P56945 870 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 DCAF6Q58WW2 860 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 DNAJC21Q5F1R6 531 aaKnown RBP26.24■■□□□ 1.79
SHOX2-201ENST00000389589 THEM5Q8N1Q8 247 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 PQLC3Q8N755 202 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 PCDH19Q8TAB3 1148 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 URGCPQ8TCY9 931 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 DHX35Q9H5Z1 703 aaKnown RBP26.24■■□□□ 1.79
SHOX2-201ENST00000389589 SAGE1Q9NXZ1 904 aa26.24■■□□□ 1.79
SHOX2-201ENST00000389589 NDUFV1P49821 464 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 MAPRE1Q15691 268 aaKnown RBP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 PAN2Q504Q3 1202 aaKnown RBP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 PPP6R3Q5H9R7 873 aaPredicted RBP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 DARS2Q6PI48 645 aaKnown RBP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 MYLPFQ96A32 169 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 NPY6RQ99463 290 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.23■■□□□ 1.798e-6■■□□□ 13.3
SHOX2-201ENST00000389589 CSNK1G1Q9HCP0 422 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 SMAPO00193 183 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 SELPP16109 830 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 GDF10P55107 478 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 DAOAP59103 153 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 OVOS1Q6IE37 1185 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 NPNTQ6UXI9 565 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 BNIPLQ7Z465 357 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 UNC45BQ8IWX7 931 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 ZMIZ2Q8NF64 920 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 NDRG1Q92597 394 aaKnown RBP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 RBM15Q96T37 977 aaKnown RBP eCLIP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 ULBP1Q9BZM6 244 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 PRDM16Q9HAZ2 1276 aa26.23■■□□□ 1.79
SHOX2-201ENST00000389589 NOVA2Q9UNW9 492 aaKnown RBP26.23■■□□□ 1.79
SHOX2-201ENST00000389589 HTTP42858 3142 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 COL6A1P12109 1028 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 ATXN1P54253 815 aaKnown RBP26.22■■□□□ 1.79
SHOX2-201ENST00000389589 LRRC8DQ7L1W4 858 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 LINC01599Q8WXQ3 324 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 TLCD1Q96CP7 247 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 STMN4Q9H169 189 aaPredicted RBP26.22■■□□□ 1.79
SHOX2-201ENST00000389589 NINJ2Q9NZG7 142 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 KANSL3Q9P2N6 904 aa26.22■■□□□ 1.79
SHOX2-201ENST00000389589 CFAP69A5D8W1 941 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 ACSL3O95573 720 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 CYP2F1P24903 491 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 RPL22P35268 128 aaKnown RBP26.21■■□□□ 1.79
SHOX2-201ENST00000389589 NOMO2Q5JPE7 1267 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 C1orf228Q6PIY5 440 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 LEKR1Q6ZMV7 388 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 FAM43BQ6ZT52 329 aaPredicted RBP26.21■■□□□ 1.79
SHOX2-201ENST00000389589 PPIL6Q8IXY8 311 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 HASPINQ8TF76 798 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 KCNK16Q96T55 309 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 NRDE2Q9H7Z3 1164 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 RCOR3Q9P2K3 495 aaPredicted RBP26.21■■□□□ 1.79
SHOX2-201ENST00000389589 PCDHB8Q9UN66 801 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 FARP1Q9Y4F1 1045 aaPredicted RBP26.21■■□□□ 1.79
SHOX2-201ENST00000389589 H7C0C1 242 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 RASGRF2O14827 1237 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 ATP5OP48047 213 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 BFSP2Q13515 415 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 KYNUQ16719 465 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 UBAP2Q5T6F2 1119 aaKnown RBP26.21■■□□□ 1.79
SHOX2-201ENST00000389589 CCDC185Q8N715 623 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 FAM71DQ8N9W8 422 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 PWWP2AQ96N64 755 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 PHACTR1Q9C0D0 580 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 C10orf88Q9H8K7 445 aa26.21■■□□□ 1.79
SHOX2-201ENST00000389589 DNAJC17Q9NVM6 304 aaKnown RBP26.21■■□□□ 1.79
SHOX2-201ENST00000389589 FZD10Q9ULW2 581 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms