RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MAPRE1Q15691 268 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 QPCTQ16769 361 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 ACCSLQ4AC99 568 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 INTS5Q6P9B9 1019 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 SP8Q8IXZ3 490 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 LRRC71Q8N4P6 559 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 TMC2Q8TDI7 906 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 NUDT12Q9BQG2 462 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 ZNF518BQ9C0D4 1074 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 USE1Q9NZ43 259 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 PIN4Q9Y237 131 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 ITGB3P05106 788 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 RAD23AP54725 363 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 HES6Q96HZ4 224 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 PLEKHA8Q96JA3 519 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 PPP1R2P1Q96PQ5 205 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 TEX13BQ9BXU2 312 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 TXNP10599 105 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 MAPK10P53779 464 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 MAP3K7CLP57077 242 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 RAB14P61106 215 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 CYP2R1Q6VVX0 501 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 BLOC1S4Q9NUP1 217 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 A0A087WXM4 84 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 ANXA9O76027 345 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 NCKAP1LP55160 1127 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 PPP4CP60510 307 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 ZCCHC9Q8N567 271 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 SH3KBP1Q96B97 665 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 SEPHS2Q99611 448 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 CNPY3Q9BT09 278 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 MTMR12Q9C0I1 747 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 KCNK4Q9NYG8 393 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 PHGDHO43175 533 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 TRIM13O60858 407 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 NUDT17P0C025 328 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 PSMB9P28065 219 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 NCALDP61601 193 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 ZNF662Q6ZS27 426 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 ZSCAN18Q8TBC5 510 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 PEX1O43933 1283 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 RGS4P49798 205 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 CHN2P52757 468 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 EXOC3L1Q86VI1 746 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 ABRAQ8N0Z2 381 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 FAM172AQ8WUF8 416 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 SLCO1B3Q9NPD5 702 aa20.11■□□□□ 0.81
CCDC88B-202ENST00000356786 SOX6P35712 828 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 MYBPC2Q14324 1141 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 GLRA4Q5JXX5 417 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 GPRC5DQ9NZD1 345 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 A0A1B0GW55 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 PRPF4O43172 522 aaKnown RBP eCLIP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 MFN2O95140 757 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 PGK2P07205 417 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4L2P0CJ85 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4L3P0CJ86 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4L4P0CJ87 422 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4L5P0CJ88 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4L6P0CJ89 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4L7P0CJ90 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 SREBF1P36956 1147 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 PPATQ06203 517 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 PRKAA1Q13131 559 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 MTMR2Q13614 643 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 RSBN1Q5VWQ0 802 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 PTRHD1Q6GMV3 140 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 LUZP2Q86TE4 346 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DHFR2Q86XF0 187 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 OR8H2Q8N162 312 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 NOL6Q9H6R4 1146 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 ATAD3AQ9NVI7 634 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 DUX4Q9UBX2 424 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 REXO2Q9Y3B8 237 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 COMMD3-BMI1R4GMX3 469 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 SPDYE5A6NIY4 337 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 CYP2C8P10632 490 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 NCAM1P13591 858 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 TRAF2Q12933 501 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 SPDYE7PQ495Y7 208 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 ARHGEF19Q8IW93 802 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 VPS37AQ8NEZ2 397 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 INPP4AQ96PE3 977 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 APOL5Q9BWW9 433 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 ROGDIQ9GZN7 287 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 PIF1Q9H611 641 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 UTP6Q9NYH9 597 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 SIGLEC1Q9BZZ2 1709 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 INPP4BO15327 924 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 BAIAP3O94812 1187 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 C1QBPQ07021 282 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 GALNTL6Q49A17 601 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 RIPOR1Q6ZS17 1223 aa20.1■□□□□ 0.81
CCDC88B-202ENST00000356786 M0QYT0 321 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ZNF862O60290 1169 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 PKNOX1P55347 436 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 CERKQ8TCT0 537 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 LPAR1Q92633 364 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms