RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 TSPAN16Q9UKR8 245 aa18.81■□□□□ 0.6
PTP4A3-202ENST00000349124 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.81■□□□□ 0.6
PTP4A3-202ENST00000349124 CSH1P0DML2 217 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 CSH2P0DML3 217 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 ESRRAP11474 423 aaPredicted RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 BST1Q10588 318 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 CAPRIN2Q6IMN6 1127 aaKnown RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 PMF1Q6P1K2 205 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 ZCCHC23Q6ZST2 131 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 OSBPL1AQ9BXW6 950 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 IFT122Q9HBG6 1241 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 PIH1D1Q9NWS0 290 aaKnown RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 SLC17A6Q9P2U8 582 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 MAD1L1Q9Y6D9 718 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 A0A087WZ62 844 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 HMX2A2RU54 273 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 RFPL1O75677 317 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 METTL18O95568 372 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 BCAR1P56945 870 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 VGLL4Q14135 290 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 CHSY1Q86X52 802 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 ARID3BQ8IVW6 561 aaPredicted RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 FDXACB1Q9BRP7 624 aaPredicted RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 ARHGEF4Q9NR80 690 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 MTO1Q9Y2Z2 717 aaKnown RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 USP2O75604 605 aaPredicted RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 CELF3Q5SZQ8 465 aaKnown RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 FGD4Q96M96 766 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 IQCGQ9H095 443 aaKnown RBP18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 C2orf40Q9H1Z8 148 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 DCLRE1BQ9H816 532 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 TNFSF13BQ9Y275 285 aa18.8■□□□□ 0.6
PTP4A3-202ENST00000349124 GABBR2O75899 941 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 TGFB3P10600 412 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 CCNHP51946 323 aaPredicted RBP18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 TMPRSS15P98073 1019 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 CHI3L2Q15782 390 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 TTC39BQ5VTQ0 682 aaPredicted RBP18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 GADL1Q6ZQY3 521 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 EP400NLQ6ZTU2 488 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 RIOX2Q8IUF8 465 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 MCUR1Q96AQ8 359 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 CLPTM1LQ96KA5 538 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 FAM167AQ96KS9 214 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 MIS12Q9H081 205 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 FAM49BQ9NUQ9 324 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 ETNK2Q9NVF9 386 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 NMRK1Q9NWW6 199 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 PLLPQ9Y342 182 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 DPPA5A6NC42 116 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 SLC15A5A6NIM6 579 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 CHADO15335 359 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 HCRTO43612 131 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 TBX10O75333 385 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 ENO1P06733 434 aaKnown RBP18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 GBE1Q04446 702 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 SLC10A2Q12908 348 aaPredicted RBP18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 Q3C1V9 767 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 UNC5AQ6ZN44 842 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 ILDR2Q71H61 639 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 FAM172AQ8WUF8 416 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 KHSRPQ92945 711 aaKnown RBP eCLIP18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 PCDH18Q9HCL0 1135 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 PCMTD2Q9NV79 361 aa18.79■□□□□ 0.6
PTP4A3-202ENST00000349124 SIP14410 1827 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 ZBED1O96006 694 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 VTNP04004 478 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 SNRPAP09012 282 aaKnown RBP18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 LINGO3P0C6S8 592 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 VDRP11473 427 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 AMPD1P23109 780 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 PEX19P40855 299 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 TFDP2Q14188 446 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 CCDC6Q16204 474 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 SPDYAQ5MJ70 313 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 PPP1R26Q5T8A7 1209 aaPredicted RBP18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.78■□□□□ 0.63e-8■■■□□ 14.8
PTP4A3-202ENST00000349124 SHKBP1Q8TBC3 707 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 UCMAQ8WVF2 138 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 DNAJC9Q8WXX5 260 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 MMP19Q99542 508 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 TXNRD2Q9NNW7 524 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 MFHAS1Q9Y4C4 1052 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 MGAMO43451 1857 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 B2RBV5 119 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 CAPN9O14815 690 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 OSBPP22059 807 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 CRADDP78560 199 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 KDSRQ06136 332 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 SNX30Q5VWJ9 437 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 FBXO41Q8TF61 875 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 SNRNP25Q9BV90 132 aaKnown RBP18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 PAK5Q9P286 719 aa18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 PPARGC1AQ9UBK2 798 aaKnown RBP18.78■□□□□ 0.6
PTP4A3-202ENST00000349124 MAP3K13O43283 966 aa18.77■□□□□ 0.6
PTP4A3-202ENST00000349124 DNAJC6O75061 913 aa18.77■□□□□ 0.6
PTP4A3-202ENST00000349124 TGDSO95455 350 aa18.77■□□□□ 0.6
PTP4A3-202ENST00000349124 ATP6V1C1P21283 382 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms