RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 PABPC1P11940 636 aaKnown RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 MAPK4P31152 587 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 STT3AP46977 705 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 SLC5A3P53794 718 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 EPHB1P54762 984 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ALDH18A1P54886 795 aaKnown RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ATP6V0D1P61421 351 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ARHGAP8P85298 464 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 TMPRSS15P98073 1019 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 GRM1Q13255 1194 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 STX3Q13277 289 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 KLF1Q13351 362 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 PDE1CQ14123 709 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 NR1D2Q14995 579 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 CYTH1Q15438 398 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 HIF1AQ16665 826 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 TRIM16LQ309B1 348 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ZBED5Q49AG3 693 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 FAM47AQ5JRC9 791 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 HP1BP3Q5SSJ5 553 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 LGSNQ5TDP6 509 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 KRT80Q6KB66 452 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 IYDQ6PHW0 289 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 RNF111Q6ZNA4 994 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 AMIGO2Q86SJ2 522 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 C11orf74Q86VG3 221 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 TICAM1Q8IUC6 712 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ARID3BQ8IVW6 561 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 POU5F2Q8N7G0 328 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 TTLL6Q8N841 843 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 PIGBQ92521 554 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 E2F7Q96AV8 911 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ISOC1Q96CN7 298 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 RANBP9Q96S59 729 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 PSD2Q9BQI7 771 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 TRIM56Q9BRZ2 755 aaKnown RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 DHX33Q9H6R0 707 aaKnown RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 SLC17A7Q9P2U7 560 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 PCDHA12Q9UN75 941 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ARHGAP26Q9UNA1 814 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 DOLKQ9UPQ8 538 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 KIAA1024Q9UPX6 916 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ERVK-11Q9UQG0 969 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ERGIC3Q9Y282 383 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ARIH1Q9Y4X5 557 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-201ENST00000343524 SPO11Q9Y5K1 396 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 ZHX2Q9Y6X8 837 aa8.42□□□□□ -1.06
ATG4A-201ENST00000343524 SDR42E2A6NKP2 422 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 KLRF2D3W0D1 207 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 TNFRSF10AO00220 468 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 COPEO14579 308 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 AQP9O43315 295 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 TRPA1O75762 1119 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 STAMBPO95630 424 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 MCF2P10911 925 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ADSSP30520 456 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 RFC4P35249 363 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 MXI1P50539 228 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 SLC12A3P55017 1021 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 AQP5P55064 265 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 SPCS2Q15005 226 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ARHGAP44Q17R89 818 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 FSCBQ5H9T9 825 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 MAP1SQ66K74 1059 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ZNF804AQ7Z570 1209 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 TPH2Q8IWU9 490 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 CHERPQ8IWX8 916 aaKnown RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 SLFN12Q8IYM2 578 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 TTC39CQ8N584 583 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 FBXO27Q8NI29 283 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 PPP4R1Q8TF05 950 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ACAP3Q96P50 834 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 FAM111AQ96PZ2 611 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 C1orf50Q9BV19 199 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 AVENQ9NQS1 362 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 APOBEC2Q9Y235 224 aaKnown RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 TLL2Q9Y6L7 1015 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 RBBP6Q7Z6E9 1792 aaKnown RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 CYP2D7A0A087X1C5 515 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 MEI4A8MW99 385 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 E9PMD0 336 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 C3orf80F5H4A9 247 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 H3BNH8 94 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 FBXO21O94952 628 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 GCNT3O95395 438 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 TDP2O95551 362 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 CAPNS1P04632 268 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 INHBAP08476 426 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 C6orf222P0C671 652 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 KRT6CP48668 564 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ATP1A4Q13733 1029 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 PHKG1Q16816 387 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 MDH1BQ5I0G3 518 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 C16orf89Q6UX73 402 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 FASTKD5Q7L8L6 764 aaKnown RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ADGRA1Q86SQ6 560 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 PALB2Q86YC2 1186 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 CLVS1Q8IUQ0 354 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 RHOT1Q8IXI2 618 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 KATNAL2Q8IYT4 538 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms