RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PDK1Q15118 436 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LIN52Q52LA3 116 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ZBTB49Q6ZSB9 765 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SLC22A9Q8IVM8 553 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ZDHHC18Q9NUE0 388 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 HEATR9A2RTY3 570 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FAM86B1E9PN63 330 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ALOX15BO15296 676 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 DCXO43602 365 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 GH1P01241 217 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FAM86B2P0C5J1 330 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TMTC4Q5T4D3 741 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LMBRD2Q68DH5 695 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 C1orf186Q6ZWK4 172 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FBXW8Q8N3Y1 598 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CCDC33Q8N5R6 958 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 C9orf16Q9BUW7 83 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LGALS13Q9UHV8 139 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CAB39Q9Y376 341 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 VIL1P09327 827 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CCDC130P13994 396 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FOLH1Q04609 750 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 NRF1Q16656 503 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CYP1B1Q16678 543 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TSPAN14Q8NG11 270 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 OR9Q1Q8NGQ5 310 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FNIP1Q8TF40 1166 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 GLMNQ92990 594 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 BTBD9Q96Q07 612 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 RTFDC1Q9BY42 306 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SSU72Q9NP77 194 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 KIAA1257Q9ULG3 409 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 PCDHA11Q9Y5I1 949 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 NAV1Q8NEY1 1877 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 RPTORQ8N122 1335 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 TCEA3O75764 348 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 RBP5P82980 135 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 WASHC5Q12768 1159 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 RINLQ6ZS11 566 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 HOMEZQ8IX15 550 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ACTL9Q8TC94 416 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 RNF139Q8WU17 664 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PIK3R5Q8WYR1 880 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CRAMP1Q96RY5 1269 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 GRIP2Q9C0E4 1043 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PLEKHA5Q9HAU0 1116 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 DAPK2Q9UIK4 370 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PHRF1Q9P1Y6 1649 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 TBC1D12O60347 775 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 SNAP91O60641 907 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CHKAP35790 457 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CDC42EP1Q00587 391 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CYP4A22Q5TCH4 519 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 UNC45BQ8IWX7 931 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 TAS1R2Q8TE23 839 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ELMO2Q96JJ3 720 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 SLITRK1Q96PX8 696 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CDRT15Q96T59 188 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 MMTAG2Q9BU76 263 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 DENND2DQ9H6A0 471 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 GALNT8Q9NY28 637 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CLIC5Q9NZA1 410 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 HBS1LQ9Y450 684 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 A8MUI8 341 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 E9PBE3 544 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 F5H423 210 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 KRT36O76013 467 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 DDHD2O94830 711 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PRKAA1Q13131 559 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 RBBP7Q16576 425 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 EGFL6Q8IUX8 553 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 RP9Q8TA86 221 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ZNF606Q8WXB4 792 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 SPATA16Q9BXB7 569 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 SHCBP1LQ9BZQ2 653 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ANKRD6Q9Y2G4 727 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PNMA8CA0A1B0GUJ8 204 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 POLNQ7Z5Q5 900 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 WDR49Q8IV35 697 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 GLIS3Q8NEA6 775 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 SKA2Q8WVK7 121 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ZNF556Q9HAH1 456 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CLK4Q9HAZ1 481 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PRDM16Q9HAZ2 1276 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 GJA3Q9Y6H8 435 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 MEI4A8MW99 385 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CACNB3P54284 484 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 PPATQ06203 517 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 CSTF3Q12996 717 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 SNX17Q15036 470 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 KCNK18Q7Z418 384 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 LNX1Q8TBB1 728 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 S100ZQ8WXG8 99 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 EXT2Q93063 718 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ACSF2Q96CM8 615 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 L3MBTL3Q96JM7 780 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 EFR3BQ9Y2G0 817 aa4.93□□□□□ -1.62
CSMD3-203ENST00000343508 AAR2Q9Y312 384 aaKnown RBP4.93□□□□□ -1.62
CSMD3-203ENST00000343508 ASTN2O75129 1339 aaPredicted RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms