RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 HIF1AQ16665 826 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 FAM187BQ17R55 369 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 WDR72Q3MJ13 1102 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 SLC45A4Q5BKX6 768 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 FAM117BQ6P1L5 589 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 DCUN1D2Q6PH85 259 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 MPZL3Q6UWV2 235 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 C4orf22Q6V702 233 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.25□□□□□ -0.611e-6■■■■■ 27.3
RTN3-201ENST00000338850 ERICH1Q86X53 443 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 NT5DC4Q86YG4 428 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 CMASQ8NFW8 434 aaPredicted RBP11.25□□□□□ -0.61
RTN3-201ENST00000338850 ADAMTS19Q8TE59 1207 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 SEPT1Q8WYJ6 367 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 TMEM143Q96AN5 459 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 C9orf72Q96LT7 481 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 MCEEQ96PE7 176 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 PCYT2Q99447 389 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 TUBB6Q9BUF5 446 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 PITPNM3Q9BZ71 974 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 XYLT2Q9H1B5 865 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 VPS11Q9H270 941 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 TLE6Q9H808 572 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 CD248Q9HCU0 757 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 PTPRHQ9HD43 1115 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 PNPLA8Q9NP80 782 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 CYLDQ9NQC7 956 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 BATF3Q9NR55 127 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 CISHQ9NSE2 258 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 MKS1Q9NXB0 559 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 NOP53Q9NZM5 478 aaKnown RBP11.25□□□□□ -0.61
RTN3-201ENST00000338850 AGAP1Q9UPQ3 857 aa11.25□□□□□ -0.61
RTN3-201ENST00000338850 PDCD11Q14690 1871 aaKnown RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 TNFRSF10AO00220 468 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 ACKR2O00590 384 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 LIN7AO14910 233 aaPredicted RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 TGDSO95455 350 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 TNNC2P02585 160 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 AMHP03971 560 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 PRKCBP05771 671 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 CFHP08603 1231 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 STIP1P31948 543 aaKnown RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 FOXN2P32314 431 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 ELF1P32519 619 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 TCF7P36402 384 aaPredicted RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 STAT5BP51692 787 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 ERVK-21P61565 698 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 OGDHQ02218 1023 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 TFF2Q03403 129 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 GPS1Q13098 491 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 STILQ15468 1287 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 SKIV2LQ15477 1246 aaKnown RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 TRIP13Q15645 432 aaPredicted RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 DBN1Q16643 649 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 MAPK6Q16659 721 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 LMBRD2Q68DH5 695 aaPredicted RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 ECHDC2Q86YB7 292 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 FITM2Q8N6M3 262 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 ANKRD42Q8N9B4 389 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 SLC4A11Q8NBS3 891 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 GIMAP7Q8NHV1 300 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 GDPD5Q8WTR4 605 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 MZB1Q8WU39 189 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 C10orf82Q8WW14 230 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 SEPT8Q92599 483 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 RTP4Q96DX8 246 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 MCRS1Q96EZ8 462 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 ANKRD36BP1Q96IX9 119 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 ZBTB45Q96K62 511 aaPredicted RBP11.24□□□□□ -0.61
RTN3-201ENST00000338850 HEMGNQ9BXL5 484 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 FZD8Q9H461 694 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 RSAD1Q9HA92 442 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 LNPEPQ9UIQ6 1025 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 KIAA1257Q9ULG3 409 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 POLIQ9UNA4 740 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 TNFSF13BQ9Y275 285 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 NRCAMQ92823 1304 aa11.24□□□□□ -0.61
RTN3-201ENST00000338850 CITO14578 2027 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 LRRD1A4D1F6 860 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 DPYSL4O14531 572 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 KLF11O14901 512 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 CHADO15335 359 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 LRCH4O75427 683 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 ZNF189O75820 626 aaPredicted RBP11.23□□□□□ -0.61
RTN3-201ENST00000338850 ERBB2P04626 1255 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 EDN1P05305 212 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 DHRS4L1P0CG22 281 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 BMP1P13497 986 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 ATF7P17544 494 aaPredicted RBP11.23□□□□□ -0.61
RTN3-201ENST00000338850 KDELR1P24390 212 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 MSH2P43246 934 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 HTRA4P83105 476 aaPredicted RBP11.23□□□□□ -0.61
RTN3-201ENST00000338850 MGAT5Q09328 741 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 TRPC3Q13507 836 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 LRRC14Q15048 493 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 ZNF699Q32M78 642 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 FAM26DQ5JW98 314 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 ZBTB41Q5SVQ8 909 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 LLGL2Q6P1M3 1020 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 PASD1Q8IV76 773 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms