RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 KLHDC10Q6PID8 442 aa18.8■□□□□ 0.6
CLSTN3-202ENST00000331148 TMEM161BQ8NDZ6 487 aa18.8■□□□□ 0.6
CLSTN3-202ENST00000331148 ACTL9Q8TC94 416 aa18.8■□□□□ 0.6
CLSTN3-202ENST00000331148 CATSPER2Q96P56 530 aa18.8■□□□□ 0.6
CLSTN3-202ENST00000331148 EBF4Q9BQW3 602 aa18.8■□□□□ 0.6
CLSTN3-202ENST00000331148 COL20A1Q9P218 1284 aa18.8■□□□□ 0.6
CLSTN3-202ENST00000331148 RLFQ13129 1914 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 IQCA1LA6NCM1 817 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 SDR42E2A6NKP2 422 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 PDE5AO76074 875 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 MRPS5P82675 430 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 RALGPS1Q5JS13 557 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 TTC39BQ5VTQ0 682 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 ICA1LQ8NDH6 482 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 REPS2Q8NFH8 660 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 DDX56Q9NY93 547 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 CASQ2O14958 399 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 FAM155BO75949 473 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 SORBS2O94875 1100 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 TFAP2AP05549 437 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 FAM163BP0C2L3 166 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 RAG1P15918 1043 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 EPHB1P54762 984 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 YWHAGP61981 247 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 OGDHQ02218 1023 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 WDR44Q5JSH3 913 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 SPOPLQ6IQ16 392 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 C15orf39Q6ZRI6 1047 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 TMC7Q7Z402 723 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 SYTL5Q8TDW5 730 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 RSAD2Q8WXG1 361 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 IRGQQ8WZA9 623 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 MCEEQ96PE7 176 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 SORCS3Q9UPU3 1222 aa18.79■□□□□ 0.6
CLSTN3-202ENST00000331148 SF3B1O75533 1304 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 PEX1O43933 1283 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 SNNO75324 88 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 RPS6P62753 249 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 WASHC5Q12768 1159 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 BRDTQ58F21 947 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 FAM102BQ5T8I3 360 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 PLA2G4FQ68DD2 849 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 SLC26A11Q86WA9 606 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 NUDCD3Q8IVD9 361 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 ANKRD13AQ8IZ07 590 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 METTL25Q8N6Q8 603 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 CNKSR2Q8WXI2 1034 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 ZNF516Q92618 1163 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 C20orf27Q9GZN8 174 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 RBM38Q9H0Z9 239 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 RIPK3Q9Y572 518 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 PCDHB4Q9Y5E5 795 aa18.78■□□□□ 0.6
CLSTN3-202ENST00000331148 C3orf70A6NLC5 250 aaPredicted RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 CYB561D2O14569 222 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 ATP6V1G1O75348 118 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 CLPTM1O96005 669 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 WEE2P0C1S8 567 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 SERPINB6P35237 376 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 BASP1P80723 227 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 BTKQ06187 659 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 TLR1Q15399 786 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 GRAMD1BQ3KR37 738 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 LMBRD2Q68DH5 695 aaPredicted RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 SNRNP48Q6IEG0 339 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 PGM2L1Q6PCE3 622 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 C1orf228Q6PIY5 440 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 TMEM270Q6UE05 265 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 MARVELD2Q8N4S9 558 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 CCDC124Q96CT7 223 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 RNF146Q9NTX7 359 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 ZNF214Q9UL59 606 aaPredicted RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 PCDHGA4Q9Y5G9 962 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 MMP8P22894 467 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 YWHABP31946 246 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 FDFT1P37268 417 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 SULT2A1Q06520 285 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 SFSWAPQ12872 951 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 SNAPC2Q13487 334 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 TMEM132BQ14DG7 1078 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 NADK2Q4G0N4 442 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 PPP1R2P3Q6NXS1 205 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 GPD1LQ8N335 351 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 POU5F2Q8N7G0 328 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 USP6NLQ92738 828 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 GCNAQ96QF7 691 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 MXRA8Q9BRK3 442 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 ELP3Q9H9T3 547 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 DDX18Q9NVP1 670 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 BLOC1S6Q9UL45 172 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 AGTPBP1Q9UPW5 1226 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 MAD1L1Q9Y6D9 718 aa18.77■□□□□ 0.6
CLSTN3-202ENST00000331148 COL11A1P12107 1806 aaPredicted RBP18.77■□□□□ 0.59
CLSTN3-202ENST00000331148 SCN4AP35499 1836 aa18.77■□□□□ 0.59
CLSTN3-202ENST00000331148 PAPPA2Q9BXP8 1791 aa18.76■□□□□ 0.59
CLSTN3-202ENST00000331148 CCDC160A6NGH7 325 aa18.76■□□□□ 0.59
CLSTN3-202ENST00000331148 HLA-DRAP01903 254 aa18.76■□□□□ 0.59
CLSTN3-202ENST00000331148 CDK4P11802 303 aa18.76■□□□□ 0.59
CLSTN3-202ENST00000331148 ITGB5P18084 799 aa18.76■□□□□ 0.59
CLSTN3-202ENST00000331148 QARSP47897 775 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-202ENST00000331148 NPTX2P47972 431 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms