RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 SAMD3Q8N6K7 520 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 VPS37AQ8NEZ2 397 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 MTMR9Q96QG7 549 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 NUDT12Q9BQG2 462 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 RTFDC1Q9BY42 306 aaPredicted RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 PAIP1Q9H074 479 aaKnown RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 LRMDAQ9H2I8 198 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 CHST12Q9NRB3 414 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 GPATCH2LQ9NWQ4 482 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 NEURL4Q96JN8 1562 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 TRIM13O60858 407 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 CDK7P50613 346 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 UBE3AQ05086 875 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 AGKQ53H12 422 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 ZNF280CQ8ND82 737 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 SPATA20Q8TB22 786 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DIS3LQ8TF46 1054 aaKnown RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 MAGED4Q96JG8 741 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 NR5A2O00482 541 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 PRPF4O43172 522 aaKnown RBP eCLIP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 TBC1D12O60347 775 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 RASSF9O75901 435 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 GP5P40197 560 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 CHN2P52757 468 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 PDK4Q16654 411 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 SEZ6Q53EL9 994 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 MFSD7Q6UXD7 560 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 SLFN11Q7Z7L1 901 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DLG3Q92796 817 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 GANQ9H2C0 597 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 AP4E1Q9UPM8 1137 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DRG1Q9Y295 367 aaKnown RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 EPHB6O15197 1021 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 PCSK1P29120 753 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 MMP13P45452 471 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 LAMC2Q13753 1193 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 THEMIS2Q5TEJ8 643 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 CACHD1Q5VU97 1274 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 SLC22A9Q8IVM8 553 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 POU5F2Q8N7G0 328 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 HES6Q96HZ4 224 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 INPP4AQ96PE3 977 aaPredicted RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 NR1H4Q96RI1 486 aaPredicted RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 SLC38A7Q9NVC3 462 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 RABGEF1Q9UJ41 708 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 COMMD3-BMI1R4GMX3 469 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 A0A1B0GW55 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4L2P0CJ85 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4L3P0CJ86 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4L4P0CJ87 422 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4L5P0CJ88 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4L6P0CJ89 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4L7P0CJ90 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 NNMTP40261 264 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DGKDQ16760 1214 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 PTRHD1Q6GMV3 140 aaKnown RBP13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DHFR2Q86XF0 187 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 LINC00116Q8NCU8 138 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 RXFP2Q8WXD0 754 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 LRRC19Q9H756 370 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 DUX4Q9UBX2 424 aa13.23□□□□□ -0.29
COL3A1-201ENST00000304636 PMPCBO75439 489 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 NCKAP1LP55160 1127 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 NAB1Q13506 487 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 GTF2H3Q13889 308 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 UGT3A1Q6NUS8 523 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 MPZL3Q6UWV2 235 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CLVS1Q8IUQ0 354 aaPredicted RBP13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CENPLQ8N0S6 344 aaPredicted RBP13.22□□□□□ -0.29
COL3A1-201ENST00000304636 EMC1Q8N766 993 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 COLGALT1Q8NBJ5 622 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 STKLD1Q8NE28 680 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 RBM46Q8TBY0 533 aaKnown RBP13.22□□□□□ -0.29
COL3A1-201ENST00000304636 TUBGCP4Q9UGJ1 667 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 SMNDC1O75940 238 aaKnown RBP eCLIP13.22□□□□□ -0.29
COL3A1-201ENST00000304636 PROCP04070 461 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CPB1P15086 417 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CHRM3P20309 590 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 PARP6Q2NL67 630 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 ZNF606Q8WXB4 792 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 PIK3R5Q8WYR1 880 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 DAPK2Q9UIK4 370 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CROTQ9UKG9 612 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 RNF112Q9ULX5 631 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 FRMPD4Q14CM0 1322 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 AP1G2O75843 785 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 PGAM1P18669 254 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CBWD6Q4V339 395 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CBWD3Q5JTY5 395 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CBWD5Q5RIA9 395 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 ERO1BQ86YB8 467 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 SH3KBP1Q96B97 665 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 TBCBQ99426 244 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 WDCPQ9H6R7 721 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 CYP3A43Q9HB55 503 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 IMPAD1Q9NX62 359 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 TECPR2O15040 1411 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 A0A087WXM4 84 aa13.22□□□□□ -0.29
COL3A1-201ENST00000304636 SPDYE5A6NIY4 337 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms