RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TAF5Q15542 800 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 OGFRL1Q5TC84 451 aaPredicted RBP13.98□□□□□ -0.17
SKA3-201ENST00000298260 PGM2L1Q6PCE3 622 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 NPNTQ6UXI9 565 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 ANO5Q75V66 913 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 KBTBD6Q86V97 674 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 NUP93Q8N1F7 819 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 PQLC1Q8N2U9 271 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 ADAM32Q8TC27 787 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 ZNF577Q9BSK1 485 aa13.98□□□□□ -0.17
SKA3-201ENST00000298260 TCN1P20061 433 aaPredicted RBP13.97□□□□□ -0.17
SKA3-201ENST00000298260 ARRB2P32121 409 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 CDKN2BP42772 138 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 CD97P48960 835 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 NT5C2P49902 561 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 GPC3P51654 580 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 PKNOX1P55347 436 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 HDAC4P56524 1084 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 NOMO3P69849 1222 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 PTP4A2Q12974 167 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 RCOR2Q8IZ40 523 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 UNC5BQ8IZJ1 945 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 FAM156AQ8NDB6 213 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 GSDMBQ8TAX9 411 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 FEZF2Q8TBJ5 459 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 ZNF516Q92618 1163 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 USP13Q92995 863 aaPredicted RBP13.97□□□□□ -0.17
SKA3-201ENST00000298260 CORO1BQ9BR76 489 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 RIMBP2O15034 1052 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 AP1G1O43747 822 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 RFPL1O75677 317 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 ITGBL1O95965 494 aaPredicted RBP13.97□□□□□ -0.17
SKA3-201ENST00000298260 AOC1P19801 751 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 SH3BGRP55822 239 aaPredicted RBP13.97□□□□□ -0.17
SKA3-201ENST00000298260 TFDP3Q5H9I0 405 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 LIN9Q5TKA1 542 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 PLA2G4FQ68DD2 849 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 ELMSAN1Q6PJG2 1045 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 SIAH1Q8IUQ4 282 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 SLC15A3Q8IY34 581 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 C1orf21Q9H246 121 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 SEMA6AQ9H2E6 1030 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 TMEM8AQ9HCN3 771 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 TIMMDC1Q9NPL8 285 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 SELENONQ9NZV5 590 aa13.97□□□□□ -0.17
SKA3-201ENST00000298260 E9PBE3 544 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 F5H423 210 aaPredicted RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 AIM2O14862 343 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 CFLARO15519 480 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 ADCY6O43306 1168 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 SLC26A4O43511 780 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 KLHL41O60662 606 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 CSH1P0DML2 217 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 CSH2P0DML3 217 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 PTPN1P18031 435 aaKnown RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 FGFR3P22607 806 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 OXCT1P55809 520 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 GSTM4Q03013 218 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 PPM1LQ5SGD2 360 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 TRMT10BQ6PF06 316 aaKnown RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 SLC35B2Q8TB61 432 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 LZICQ8WZA0 190 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 FAM213AQ9BRX8 229 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 MRPS26Q9BYN8 205 aaKnown RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 FAIMQ9NVQ4 179 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 SIRPGQ9P1W8 387 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 PCSK1NQ9UHG2 260 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 PPME1Q9Y570 386 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 UBE4BO95155 1302 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 CNTNAP2Q9UHC6 1331 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 STX16-NPEPL1H3BU86 382 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 ITGAVP06756 1048 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 ZNF24P17028 368 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 ZNF362Q5T0B9 420 aaPredicted RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 FAM102BQ5T8I3 360 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 ATG16L1Q676U5 607 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 GRAMD4Q6IC98 578 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 FASTKD5Q7L8L6 764 aaKnown RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 PATL1Q86TB9 770 aaKnown RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 PGBD4Q96DM1 585 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 ABHD8Q96I13 439 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 TMEM206Q9H813 350 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 RRN3Q9NYV6 651 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 TJP2Q9UDY2 1190 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 EBF1Q9UH73 591 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 HERC5Q9UII4 1024 aaKnown RBP13.96□□□□□ -0.17
SKA3-201ENST00000298260 PCDHB2Q9Y5E7 798 aa13.96□□□□□ -0.17
SKA3-201ENST00000298260 PLIN4Q96Q06 1357 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 DENRO43583 198 aaKnown RBP13.96□□□□□ -0.18
SKA3-201ENST00000298260 FBXO21O94952 628 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 TNFAIP8O95379 198 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 MMP10P09238 476 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 IL1R2P27930 398 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 MTTPP55157 894 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 IGBP1P78318 339 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 EML3Q32P44 896 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 SLC10A5Q5PT55 438 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 DCUN1D2Q6PH85 259 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 POTEHQ6S545 545 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 TRIM50Q86XT4 487 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms