RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TNFRSF8P28908 595 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 MATKP42679 507 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 RPL34P49207 117 aaKnown RBP17.21■□□□□ 0.34
USP4-201ENST00000265560 FNTAP49354 379 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 DNAJC5GQ8N7S2 189 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 FMO2Q99518 471 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 CRISPLD2Q9H0B8 497 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 ZDHHC18Q9NUE0 388 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 MARCH5Q9NX47 278 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 KANSL3Q9P2N6 904 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 TSC2P49815 1807 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 GOLGA6BA6NDN3 693 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 FAM187AA6NFU0 413 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 SGK1O00141 431 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 DAOAP59103 153 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 PPP2R5EQ16537 467 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 OTUD1Q5VV17 481 aaPredicted RBP17.2■□□□□ 0.34
USP4-201ENST00000265560 PRSS55Q6UWB4 352 aaPredicted RBP17.2■□□□□ 0.34
USP4-201ENST00000265560 ZDHHC17Q8IUH5 632 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 PKMYT1Q99640 499 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 DDX23Q9BUQ8 820 aaKnown RBP17.2■□□□□ 0.34
USP4-201ENST00000265560 PIGVQ9NUD9 493 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 HSF2BPO75031 334 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 ZBED1O96006 694 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 CTXN3Q4LDR2 81 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 RTP2Q5QGT7 225 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 HP1BP3Q5SSJ5 553 aaPredicted RBP17.2■□□□□ 0.34
USP4-201ENST00000265560 ZNF365Q70YC5 407 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 SEC14L1Q92503 715 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 ANLNQ9NQW6 1124 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 FAM114A2Q9NRY5 505 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 PCDHB8Q9UN66 801 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 SNX10Q9Y5X0 201 aa17.2■□□□□ 0.34
USP4-201ENST00000265560 BHMG1C9JSJ3 638 aaPredicted RBP17.19■□□□□ 0.34
USP4-201ENST00000265560 ZIM3Q96PE6 472 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 PCDH18Q9HCL0 1135 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.19■□□□□ 0.344e-6■■■■□ 20.5
USP4-201ENST00000265560 AP4E1Q9UPM8 1137 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 UNC80Q8N2C7 3258 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 TP73O15350 636 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 INPPL1O15357 1258 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 GALTP07902 379 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 UAP1Q16222 522 aaPredicted RBP17.19■□□□□ 0.34
USP4-201ENST00000265560 NPAS4Q8IUM7 802 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 SPATA18Q8TC71 538 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.19■□□□□ 0.34
USP4-201ENST00000265560 MAIP1Q8WWC4 291 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 ETNK2Q9NVF9 386 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 CREB3O43889 395 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 DEFB103AP81534 67 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 ACAP1Q15027 740 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 ERMARDQ5T6L9 678 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 PCDH19Q8TAB3 1148 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 KCTD13Q8WZ19 329 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 CAVIN3Q969G5 261 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 C11orf84Q9BUA3 381 aaPredicted RBP17.19■□□□□ 0.34
USP4-201ENST00000265560 CENPHQ9H3R5 247 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 POPDC2Q9HBU9 364 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 DMAP1Q9NPF5 467 aaPredicted RBP17.19■□□□□ 0.34
USP4-201ENST00000265560 DSEQ9UL01 958 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 TBX21Q9UL17 535 aa17.19■□□□□ 0.34
USP4-201ENST00000265560 I6L893 689 aaPredicted RBP17.18■□□□□ 0.34
USP4-201ENST00000265560 DPYSL4O14531 572 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 ATP8B1O43520 1251 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 GAS8O95995 478 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 GOT1P17174 413 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 IVDP26440 423 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 CHKAP35790 457 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 HSD17B3P37058 310 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 ARSEP51690 589 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 ITGA8P53708 1063 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 C1QTNF8P60827 252 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 SLC25A52Q3SY17 297 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 SPOUT1Q5T280 376 aaKnown RBP17.18■□□□□ 0.34
USP4-201ENST00000265560 UNC45BQ8IWX7 931 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 CRIPAKQ8N1N5 446 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 FAM71DQ8N9W8 422 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 PIK3R5Q8WYR1 880 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 TRIM43BA6NCK2 446 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 SYF2O95926 243 aaKnown RBP17.18■□□□□ 0.34
USP4-201ENST00000265560 COL6A1P12109 1028 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 AMPD1P23109 780 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 P3H1Q32P28 736 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 BOLA3Q53S33 107 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 ANKRD20A8PQ5CZ79 823 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 BSPRYQ5W0U4 402 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 OTOP2Q7RTS6 562 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 PQLC3Q8N755 202 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 TRIM43Q96BQ3 446 aaPredicted RBP17.18■□□□□ 0.34
USP4-201ENST00000265560 KCTD15Q96SI1 283 aaPredicted RBP17.18■□□□□ 0.34
USP4-201ENST00000265560 CRISPLD1Q9H336 500 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 DDIT4Q9NX09 232 aa17.18■□□□□ 0.34
USP4-201ENST00000265560 GOLGA8MH3BSY2 632 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 ADAM12O43184 909 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 LTFP02788 710 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 CPB1P15086 417 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 L1CAMP32004 1257 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 PTPN9P43378 593 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 SLC5A3P53794 718 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 COPS2P61201 443 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms