RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 LGALS3BPQ08380 585 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 LDHDQ86WU2 507 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 CYP4X1Q8N118 509 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 CCNT2O60583 730 aaKnown RBP11.71□□□□□ -0.53
PTPN4-201ENST00000263708 CCND1P24385 295 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 MARSP56192 900 aaKnown RBP11.71□□□□□ -0.53
PTPN4-201ENST00000263708 TAF2Q6P1X5 1199 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 SEPT12Q8IYM1 358 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 TRPV3Q8NET8 790 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 SPPL2AQ8TCT8 520 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 LRRC1Q9BTT6 524 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 SLC35C2Q9NQQ7 365 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 TSPAN9O75954 239 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 CTCFP49711 727 aaPredicted RBP11.71□□□□□ -0.53
PTPN4-201ENST00000263708 SOHLH2Q9NX45 425 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 DAPK2Q9UIK4 370 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 GPATCH8Q9UKJ3 1502 aaKnown RBP11.71□□□□□ -0.53
PTPN4-201ENST00000263708 PRMT3O60678 531 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 SPAG6O75602 509 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 GTF2H1P32780 548 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 EPHB3P54753 998 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 GNA13Q14344 377 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 EPC1Q9H2F5 836 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 STAG3L1P0CL83 205 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 MYL4P12829 197 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 ITGA8P53708 1063 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 OXCT1P55809 520 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 SRSF11Q05519 484 aaKnown RBP11.71□□□□□ -0.54
PTPN4-201ENST00000263708 PI4K2AQ9BTU6 479 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 RHBGQ9H310 441 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 PTPRHQ9HD43 1115 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 TBX22Q9Y458 520 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 MAPKBP1O60336 1514 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 KAT6AQ92794 2004 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 SNUPNO95149 360 aaKnown RBP11.71□□□□□ -0.54
PTPN4-201ENST00000263708 FAM171BQ6P995 826 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 AHSPQ9NZD4 102 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 MROH7-TTC4A0A0A0MT08 1334 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 TTC26A0AVF1 554 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 C17orf102A2RUQ5 167 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 SREBF2Q12772 1141 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 GRM4Q14833 912 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 OSCP1Q8WVF1 389 aa11.71□□□□□ -0.54
PTPN4-201ENST00000263708 EXTL3O43909 919 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CYP2C9P11712 490 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PSMD4P55036 377 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 EXOSC10Q01780 885 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 SUSD4Q5VX71 490 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 SPATA4Q8NEY3 305 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 IGFLR1Q9H665 355 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PDE9AO76083 593 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 AMPD2Q01433 879 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CYB5R4Q7L1T6 521 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PPIL6Q8IXY8 311 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 UBE2OQ9C0C9 1292 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CEP44Q9C0F1 390 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 RPS6KL1Q9Y6S9 549 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 WDR62O43379 1518 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 BTN3A3O00478 584 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 MAGEB2O15479 319 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 MARK2Q7KZI7 788 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 RGL4Q8IZJ4 473 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CCDC126Q96EE4 140 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 FAM120BQ96EK7 910 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 THG1LQ9NWX6 298 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 MARK1Q9P0L2 795 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 RRN3P2A6NIE6 340 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 MGRN1O60291 552 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 NDUFS2O75306 463 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 REXO5Q96IC2 774 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CCT8L2Q96SF2 557 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 TMEM79Q9BSE2 394 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PALLDQ8WX93 1383 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 ADGRA3Q8IWK6 1321 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PVALEFA0A1B0GWK0 134 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 ERI2A8K979 691 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 SLC2A4P14672 509 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 EID3Q8N140 333 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 HASPINQ8TF76 798 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 C18orf25Q96B23 403 aaPredicted RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PNMA5Q96PV4 448 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PHF11Q9UIL8 331 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 AAR2Q9Y312 384 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CBX4O00257 560 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 SLC16A3O15427 465 aaKnown RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 AP1G2O75843 785 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 ITGB3P05106 788 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 VHLP40337 213 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 FCHO2Q0JRZ9 810 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 STRIP1Q5VSL9 837 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 HPS3Q969F9 1004 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 BHLHE41Q9C0J9 482 aaPredicted RBP11.7□□□□□ -0.54
PTPN4-201ENST00000263708 PRAMEF22A3QJZ6 481 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 ADCY6O43306 1168 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 CRTAMO95727 393 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 EGFRP00533 1210 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 URODP06132 367 aa11.7□□□□□ -0.54
PTPN4-201ENST00000263708 ITGALP20701 1170 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms