RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TGM2P21980 687 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 PPM1AP35813 382 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CASP7P55210 303 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 C1QBPQ07021 282 aaKnown RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 TRPM8Q7Z2W7 1104 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 SLC30A5Q8TAD4 765 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 TRPC5OSA6NMA1 111 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 VPS26AO75436 327 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 KLHL2O95198 593 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CCDC166P0CW27 439 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 RBP3P10745 1247 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CARSP49589 748 aaKnown RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 MAGOHP61326 146 aaKnown RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 SP3Q02447 781 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 AASDHQ4L235 1098 aaPredicted RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 MAP1SQ66K74 1059 aaPredicted RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 ENGASEQ8NFI3 743 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 SYT15Q9BQS2 421 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 PDGFCQ9NRA1 345 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 TMED5Q9Y3A6 229 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CDY2AQ9Y6F7 541 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CDY1Q9Y6F8 540 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 HPCAP84074 193 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 KIZQ2M2Z5 673 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 UBA3Q8TBC4 463 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 P2RX7Q99572 595 aaKnown RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 TSEN34Q9BSV6 310 aaKnown RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 GANQ9H2C0 597 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 CCDC189A1A4V9 331 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 PPP1R3GB7ZBB8 358 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 TIMM44O43615 452 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 CST8O60676 142 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 ACO1P21399 889 aaKnown RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 COMTP21964 271 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 LRPAP1P30533 357 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 AGAP9Q5VTM2 703 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 APOBEC3HQ6NTF7 200 aaKnown RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 ADCK2Q7Z695 626 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 DRAXINQ8NBI3 349 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 GLIS2Q9BZE0 524 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 COL1A2P08123 1366 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 FRMPD4Q14CM0 1322 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 DNAL1Q4LDG9 190 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 ZRANB3Q5FWF4 1079 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 ZBTB41Q5SVQ8 909 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 CDH24Q86UP0 819 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 DNPEPQ9ULA0 475 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 NCKAP1Q9Y2A7 1128 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 AP4S1Q9Y587 144 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 COL3A1P02461 1466 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 KDM4FA0A1W2PPD8 638 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 OCM2P0CE71 109 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 OCMP0CE72 109 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 CCR1P32246 355 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 PTPN21Q16825 1174 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 ZNF438Q7Z4V0 828 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 PIK3CDO00329 1044 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 NCK2O43639 380 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 SLC9A1P19634 815 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 GRK3P35626 688 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 PTPN11Q06124 597 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 MAP2K5Q13163 448 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 ZNF268Q14587 947 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 SLC45A4Q5BKX6 768 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 PPM1LQ5SGD2 360 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 TRIM65Q6PJ69 517 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 C16orf89Q6UX73 402 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 YTHDF3Q7Z739 585 aaKnown RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 IPMKQ8NFU5 416 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 CSGALNACT1Q8TDX6 532 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 RBBP8Q99708 897 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 FDXACB1Q9BRP7 624 aaPredicted RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 TINF2Q9BSI4 451 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 L2HGDHQ9H9P8 463 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 SYTL2Q9HCH5 934 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 GALNT8Q9NY28 637 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 LRCH1Q9Y2L9 728 aa13.17□□□□□ -0.3
USP40-201ENST00000251722 FAM32AQ9Y421 112 aaKnown RBP13.17□□□□□ -0.3
USP40-201ENST00000251722 MROH1Q8NDA8 1641 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 NFIBO00712 420 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 CYP2A6P11509 494 aaPredicted RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 CACNA2D1P54289 1103 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 GUCY1A3Q02108 690 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 PEX6Q13608 980 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 UNC93AQ86WB7 457 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 EFHD2Q96C19 240 aaPredicted RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 AGXT2Q9BYV1 514 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 MTMR12Q9C0I1 747 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 KRCC1Q9NPI7 259 aaPredicted RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 ALG6Q9Y672 507 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 SCTRP47872 440 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 SMARCB1Q12824 385 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 HABP4Q5JVS0 413 aaKnown RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 PLPPR4Q7Z2D5 763 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 ZNF507Q8TCN5 953 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 ARL8AQ96BM9 186 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 ATP6V1HQ9UI12 483 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 FBXL5Q9UKA1 691 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 CTDNEP1O95476 244 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms