RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W TCB3Q03640 1545 aaKnown RBP-0.52□□□□□ -2.49
PRP42YDR235W YOR192C-CQ3E736 78 aa-0.53□□□□□ -2.49
PRP42YDR235W YFL041W-AQ3E817 63 aa-0.53□□□□□ -2.49
PRP42YDR235W IRA1P18963 3092 aa-0.53□□□□□ -2.49
PRP42YDR235W Q0017Q9ZZX8 53 aa-0.54□□□□□ -2.5
PRP42YDR235W IRA2P19158 3079 aa-0.54□□□□□ -2.5
PRP42YDR235W YBT1P32386 1661 aa-0.54□□□□□ -2.5
PRP42YDR235W PAI3P01094 68 aa-0.55□□□□□ -2.5
PRP42YDR235W YIL102C-AQ2V2P5 75 aa-0.55□□□□□ -2.5
PRP42YDR235W MYO4P32492 1471 aa-0.56□□□□□ -2.5
PRP42YDR235W FLO1P32768 1537 aa-0.56□□□□□ -2.5
PRP42YDR235W YPR010C-AA5Z2X5 72 aa-0.56□□□□□ -2.5
PRP42YDR235W RPL29P05747 59 aaPredicted RBP-0.56□□□□□ -2.5
PRP42YDR235W YDR034C-AP0C289 58 aa-0.56□□□□□ -2.5
PRP42YDR235W SKI3P17883 1432 aaKnown RBP-0.57□□□□□ -2.5
PRP42YDR235W SSK2P53599 1579 aa-0.57□□□□□ -2.5
PRP42YDR235W CUP1-1P0CX80 61 aa-0.57□□□□□ -2.5
PRP42YDR235W CUP1-2P0CX81 61 aa-0.57□□□□□ -2.5
PRP42YDR235W GCN2P15442 1659 aa-0.57□□□□□ -2.5
PRP42YDR235W BCK1Q01389 1478 aa-0.58□□□□□ -2.5
PRP42YDR235W PDR5P33302 1511 aaKnown RBP-0.58□□□□□ -2.5
PRP42YDR235W YCF1P39109 1515 aaKnown RBP-0.58□□□□□ -2.5
PRP42YDR235W NUP188P52593 1655 aaKnown RBP-0.59□□□□□ -2.5
PRP42YDR235W VPS13Q07878 3144 aa-0.6□□□□□ -2.5
PRP42YDR235W YOR316C-AQ3E806 69 aa-0.6□□□□□ -2.5
PRP42YDR235W YML054C-AQ3E809 52 aa-0.6□□□□□ -2.5
PRP42YDR235W CDC25P04821 1589 aa-0.62□□□□□ -2.51
PRP42YDR235W NUM1Q00402 2748 aa-0.62□□□□□ -2.51
PRP42YDR235W BUD3P25558 1636 aa-0.62□□□□□ -2.51
PRP42YDR235W HIR3P47171 1648 aa-0.63□□□□□ -2.51
PRP42YDR235W ATG2P53855 1592 aa-0.64□□□□□ -2.51
PRP42YDR235W YJL133C-AQ3E7A3 74 aa-0.64□□□□□ -2.51
PRP42YDR235W STU1P38198 1513 aa-0.66□□□□□ -2.51
PRP42YDR235W ULS1Q08562 1619 aa-0.66□□□□□ -2.51
PRP42YDR235W YFR010W-AP0C5N0 62 aa-0.66□□□□□ -2.51
PRP42YDR235W VMA9Q3E7B6 73 aa-0.66□□□□□ -2.51
PRP42YDR235W USO1P25386 1790 aa-0.66□□□□□ -2.51
PRP42YDR235W YHR073W-AP0C5N7 58 aa-0.67□□□□□ -2.52
PRP42YDR235W NUP192P47054 1683 aa-0.67□□□□□ -2.52
PRP42YDR235W DDR2P89113 61 aa-0.68□□□□□ -2.52
PRP42YDR235W YKL023C-AQ2V2P3 75 aa-0.69□□□□□ -2.52
PRP42YDR235W YLR342W-AQ3E810 57 aa-0.69□□□□□ -2.52
PRP42YDR235W YMR105W-AQ8TGS8 64 aa-0.69□□□□□ -2.52
PRP42YDR235W NUP170P38181 1502 aa-0.72□□□□□ -2.52
PRP42YDR235W SPT6P23615 1451 aaKnown RBP-0.72□□□□□ -2.52
PRP42YDR235W YJL127C-BQ3E828 52 aa-0.73□□□□□ -2.53
PRP42YDR235W PEP1P32319 1579 aa-0.74□□□□□ -2.53
PRP42YDR235W RKR1Q04781 1562 aa-0.74□□□□□ -2.53
PRP42YDR235W COX9P07255 59 aa-0.75□□□□□ -2.53
PRP42YDR235W TOM1Q03280 3268 aa-0.79□□□□□ -2.54
PRP42YDR235W MON2P48563 1636 aaPredicted RBP-0.8□□□□□ -2.54
PRP42YDR235W SMX2P40204 77 aaKnown RBP-0.82□□□□□ -2.54
PRP42YDR235W PMP3P87284 55 aa-0.82□□□□□ -2.54
PRP42YDR235W CHC1P22137 1653 aaKnown RBP-0.82□□□□□ -2.54
PRP42YDR235W YLL066W-BQ8TGJ7 56 aa-0.86□□□□□ -2.55
PRP42YDR235W TOM7P53507 60 aa-0.86□□□□□ -2.55
PRP42YDR235W HOR7Q05827 59 aa-0.89□□□□□ -2.55
PRP42YDR235W MLP2P40457 1679 aa-0.89□□□□□ -2.55
PRP42YDR235W NCE101Q02820 53 aa-1.02□□□□□ -2.57
PRP42YDR235W RPL39P04650 51 aa-1.08□□□□□ -2.58
PRP42YDR235W Q0297Q9ZZV8 51 aa-1.19□□□□□ -2.6
PRP42YDR235W YIL046W-AQ3E7Z4 54 aa-1.26□□□□□ -2.61
PRP42YDR235W YDR034W-BQ6Q5X2 51 aa-1.58□□□□□ -2.66
Retrieved 63 of 5,963 RNA–protein pairs in 10.2 ms