RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZNF507Q8TCN5 953 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 PLEKHO2Q8TD55 490 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 HMGB4Q8WW32 186 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 ADAMTS14Q8WXS8 1223 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 OVCA2Q8WZ82 227 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 HPS3Q969F9 1004 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 OTUB2Q96DC9 234 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 ANKRD36BP1Q96IX9 119 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 CAMK1GQ96NX5 476 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 PANK2Q9BZ23 570 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TRIM9Q9C026 710 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SLC32A1Q9H598 525 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 CCSER2Q9H7U1 834 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 CD93Q9NPY3 652 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SPHK2Q9NRA0 654 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 PANK4Q9NVE7 773 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 HSPBP1Q9NZL4 362 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TBC1D14Q9P2M4 693 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 FBXO10Q9UK96 956 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SMC3Q9UQE7 1217 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 GPSM3Q9Y4H4 160 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 KNL1Q8NG31 2342 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SMG1Q96Q15 3661 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 SETXQ7Z333 2677 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 FLNBO75369 2602 aaKnown RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 HELZ2Q9BYK8 2649 aaKnown RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 TNRC6BQ9UPQ9 1833 aaKnown RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 A0A1W2PQD8 194 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 PRRT4C9JH25 899 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 H0Y626 953 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 AP5Z1O43299 807 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SH3BP5O60239 455 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CBFA2T3O75081 653 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 BEST1O76090 585 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 TRIM16O95361 564 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 ABL1P00519 1130 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 TNNC2P02585 160 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CFIP05156 583 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 MBL2P11226 248 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 IDEP14735 1019 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 NDUFV2P19404 249 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 ANXA13P27216 316 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 YWHAQP27348 245 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 NTSR1P30989 418 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 WASP42768 502 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CDH8P55286 799 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 BNC1Q01954 994 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 RPL6Q02878 288 aaKnown RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 GFPT1Q06210 699 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 EHHADHQ08426 723 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SCAPQ12770 1279 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SLC14A1Q13336 389 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CUL4AQ13619 759 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 PSMD6Q15008 389 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 ZNF423Q2M1K9 1284 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 WDR72Q3MJ13 1102 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SOWAHCQ53LP3 525 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 HECTD3Q5T447 861 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 EGFLAMQ63HQ2 1017 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SLC36A4Q6YBV0 504 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CCNI2Q6ZMN8 369 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 DBX2Q6ZNG2 339 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SLCO6A1Q86UG4 719 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 DDX42Q86XP3 938 aaKnown RBP eCLIP6.49□□□□□ -1.37
VRK3-220ENST00000600259 ZNF513Q8N8E2 541 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 TRIML1Q8N9V2 468 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 B3GALNT2Q8NCR0 500 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 OR6B3Q8NGW1 331 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 RASSF8Q8NHQ8 419 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 IPO4Q8TEX9 1081 aaKnown RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 DNASE2BQ8WZ79 361 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SPOCK2Q92563 424 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SPACA7Q96KW9 195 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SLITRK1Q96PX8 696 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 MMS19Q96T76 1030 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 GABRG3Q99928 467 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 KLF16Q9BXK1 252 aaPredicted RBP6.49□□□□□ -1.37
VRK3-220ENST00000600259 ELOVL4Q9GZR5 314 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 SDCBP2Q9H190 292 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 VRTNQ9H8Y1 702 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 KIAA1586Q9HCI6 787 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 KBTBD4Q9NVX7 518 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 EHD2Q9NZN4 543 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CALCOCO1Q9P1Z2 691 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 DEC1Q9P2X7 70 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 CCDC39Q9UFE4 941 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 PCDH15Q96QU1 1955 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 ACACAQ13085 2346 aa6.49□□□□□ -1.37
VRK3-220ENST00000600259 TCHHQ07283 1943 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 WASH3PC4AMC7 463 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 TULP1O00294 542 aaPredicted RBP6.48□□□□□ -1.37
VRK3-220ENST00000600259 CACNG3O60359 315 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 OPHN1O60890 802 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 DKK1O94907 266 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 RTN3O95197 1032 aaPredicted RBP6.48□□□□□ -1.37
VRK3-220ENST00000600259 TBX18O95935 607 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 C7P10643 843 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 HOXB2P14652 356 aa6.48□□□□□ -1.37
VRK3-220ENST00000600259 MAOBP27338 520 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms