RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GSTA3Q16772 222 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 ZC2HC1CQ53FD0 456 aaPredicted RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 USP39Q53GS9 565 aaKnown RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 MDH1BQ5I0G3 518 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 INTS5Q6P9B9 1019 aaKnown RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 TMEM176AQ96HP8 235 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 FDXACB1Q9BRP7 624 aaPredicted RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 SETD4Q9NVD3 440 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 FAM205AQ6ZU69 1335 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 GLP2RO95838 553 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 ZNF7P17097 686 aaPredicted RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 LAMTOR4Q0VGL1 99 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 BHMTQ93088 406 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 AGO4Q9HCK5 861 aaKnown RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 RASSF9O75901 435 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 GHRP10912 638 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 CTNNB1P35222 781 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 PIK3CGP48736 1102 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 LVRNQ6Q4G3 990 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 P3H2Q8IVL5 708 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 CLEC4FQ8N1N0 589 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 STARD8Q92502 1023 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 TMA16Q96EY4 203 aaKnown RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 LMTK2Q8IWU2 1503 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 KHDRBS1Q07666 443 aaKnown RBP eCLIP21.12■□□□□ 0.97
UPF1-207ENST00000599848 ZPBP2Q6X784 338 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 APBA2Q99767 749 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 PSEN1P49768 467 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 SERPINB8P50452 374 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 SGO1Q5FBB7 561 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 FAM46CQ5VWP2 391 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 CHMP2BQ9UQN3 213 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 NPTX2P47972 431 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 ALDH5A1P51649 535 aaPredicted RBP21.12■□□□□ 0.97
UPF1-207ENST00000599848 MARC1Q5VT66 337 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 ANKRD23Q86SG2 305 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 ASAH2Q9NR71 780 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 ZNF609O15014 1411 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 HS6ST1O60243 411 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 KRT6AP02538 564 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 KRT6BP04259 564 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 KRT6CP48668 564 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 MAD2L1Q13257 205 aaPredicted RBP21.12■□□□□ 0.97
UPF1-207ENST00000599848 KLHDC7AQ5VTJ3 777 aa21.12■□□□□ 0.97
UPF1-207ENST00000599848 MAGEB10Q96LZ2 347 aaPredicted RBP21.12■□□□□ 0.97
UPF1-207ENST00000599848 SDR42E2A6NKP2 422 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 GLRA3O75311 464 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 TKTL1P51854 596 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 PTPN21Q16825 1174 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 DENND1BQ6P3S1 775 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 ZNF333Q96JL9 665 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 ZC4H2Q9NQZ6 224 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 NEK2P51955 445 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 DNAJB3Q8WWF6 145 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 RSPH1Q8WYR4 309 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 GLMNQ92990 594 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 ECSITQ9BQ95 431 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 TMEM245Q9H330 911 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 MTO1Q9Y2Z2 717 aaKnown RBP21.11■□□□□ 0.97
UPF1-207ENST00000599848 NRCAMQ92823 1304 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 CLK3P49761 638 aaKnown RBP21.11■□□□□ 0.97
UPF1-207ENST00000599848 MRPS15P82914 257 aaKnown RBP21.11■□□□□ 0.97
UPF1-207ENST00000599848 NUP93Q8N1F7 819 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 OMDQ99983 421 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 ATP13A1Q9HD20 1204 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 PCMTD2Q9NV79 361 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 SF3B1O75533 1304 aaKnown RBP eCLIP21.11■□□□□ 0.976e-7■■■■■ 154
UPF1-207ENST00000599848 QSOX1O00391 747 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 CYP2C18P33260 490 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 MAPK9P45984 424 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 DEPDC1Q5TB30 811 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 ZNF507Q8TCN5 953 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 MTMR12Q9C0I1 747 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 TRIT1Q9H3H1 467 aaKnown RBP21.11■□□□□ 0.97
UPF1-207ENST00000599848 DCDC2Q9UHG0 476 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 BARX2Q9UMQ3 279 aaPredicted RBP21.11■□□□□ 0.97
UPF1-207ENST00000599848 SNX12Q9UMY4 172 aa21.11■□□□□ 0.97
UPF1-207ENST00000599848 SLCO1B7G3V0H7 640 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 TK2O00142 265 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 ASGR1P07306 291 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 GRAMD4Q6IC98 578 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 USP38Q8NB14 1042 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 USP18Q9UMW8 372 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 CARSP49589 748 aaKnown RBP21.1■□□□□ 0.97
UPF1-207ENST00000599848 MAP3K7CLP57077 242 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 TRMT11Q7Z4G4 463 aaKnown RBP21.1■□□□□ 0.97
UPF1-207ENST00000599848 MAPRE3Q9UPY8 281 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 CASTOR2A6NHX0 329 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 SMIM22K7EJ46 135 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 DEAF1O75398 565 aaPredicted RBP21.1■□□□□ 0.97
UPF1-207ENST00000599848 ZNF24P17028 368 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 CHKAP35790 457 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 PTPN11Q06124 597 aaPredicted RBP21.1■□□□□ 0.97
UPF1-207ENST00000599848 CYP2A13Q16696 494 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.1■□□□□ 0.979e-6■■■■□ 25.2
UPF1-207ENST00000599848 PAPOLBQ9NRJ5 636 aaKnown RBP21.1■□□□□ 0.97
UPF1-207ENST00000599848 NDOR1Q9UHB4 597 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 MRPS17Q9Y2R5 130 aaKnown RBP21.1■□□□□ 0.97
UPF1-207ENST00000599848 CNTNAP2Q9UHC6 1331 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 CLTCL1P53675 1640 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms