RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 DDX6P26196 483 aaKnown RBP eCLIP3.32□□□□□ -1.88
VRK3-204ENST00000593912 CD27P26842 260 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 MCM4P33991 863 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 UGT1A5P35504 534 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 EIF2DP41214 584 aaKnown RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 DMP1Q13316 513 aaPredicted RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 ZNF211Q13398 564 aaPredicted RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 DRAP1Q14919 205 aaPredicted RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 VEPH1Q14D04 833 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 NR6A1Q15406 480 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 ALX1Q15699 326 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 NADK2Q4G0N4 442 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 C14orf28Q4W4Y0 310 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 LY6G5CQ5SRR4 150 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 ANO5Q75V66 913 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 METTL3Q86U44 580 aaKnown RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 TMPRSS6Q8IU80 811 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 TGIF2LYQ8IUE0 185 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 ETFBKMTQ8IXQ9 262 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 ADGRG2Q8IZP9 1017 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 SLC25A45Q8N413 288 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 IFI44Q8TCB0 444 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 PSPC1Q8WXF1 523 aaKnown RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 FRAT1Q92837 279 aaPredicted RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 SIPA1Q96FS4 1042 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 SUSD3Q96L08 255 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 NUP58Q9BVL2 599 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 ANO3Q9BYT9 981 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 UNC45AQ9H3U1 944 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 RUBCNLQ9H714 662 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 GDF3Q9NR23 364 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 UCKL1Q9NWZ5 548 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 FOXJ2Q9P0K8 574 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 SEPT10Q9P0V9 454 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 LUZP4Q9P127 313 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 ZSWIM5Q9P217 1185 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 MAP10Q9P2G4 905 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 RPH3AQ9Y2J0 694 aaPredicted RBP3.32□□□□□ -1.88
VRK3-204ENST00000593912 NUB1Q9Y5A7 615 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 PCDHGA7Q9Y5G6 932 aa3.32□□□□□ -1.88
VRK3-204ENST00000593912 TRAV19A0A0A6YYK7 116 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 A0A1B0GUA9 196 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 A0A1W2PR77 199 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 TARSL2A2RTX5 802 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 HEATR9A2RTY3 570 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 FAM47DPA6NHR8 397 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 RNF212BA8MTL3 300 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 PLD2O14939 933 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 YKT6O15498 198 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 NKX2-8O15522 239 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 GRID2O43424 1007 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ZG16O60844 167 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 CNTN5O94779 1100 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 PLEKHA8P1O95397 391 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 SEMA4FO95754 770 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 IGLV3-19P01714 112 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 EDN1P05305 212 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 IGHV4-34P06331 123 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 P4HBP07237 508 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 USP17L7P0C7H9 530 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 GIMD1P0DJR0 217 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ACADMP11310 421 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 CKMT1AP12532 417 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 LIFP15018 202 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 SMARCA1P28370 1054 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 OXTRP30559 389 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 PTGER4P35408 488 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ETV5P41161 510 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 MLLT3P42568 568 aaPredicted RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 ARRB1P49407 418 aaPredicted RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 COPAP53621 1224 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 PTENP60484 403 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 RACK1P63244 317 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 YWHAHQ04917 246 aaPredicted RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 SSRP1Q08945 709 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 NCBP1Q09161 790 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 FOXD4Q12950 439 aaPredicted RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 GPR17Q13304 367 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 CAPSQ13938 189 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 SEC23AQ15436 765 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ZRSR2Q15696 482 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 INPP5JQ15735 1006 aaPredicted RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 DEFB109BQ30KR1 87 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 HSP90AB4PQ58FF6 505 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 XKR3Q5GH77 459 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ATP1A1-AS1Q5TC04 95 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 EEF1DP3Q658K8 133 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 NUGGCQ68CJ6 796 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 SDE2Q6IQ49 451 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 GUSBP11Q6P575 273 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 RBM44Q6ZP01 1051 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 ASB18Q6ZVZ8 466 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 CYB5R4Q7L1T6 521 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 NIPA1Q7RTP0 329 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 B3GNT8Q7Z7M8 397 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ZNF589Q86UQ0 364 aaPredicted RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 FERMT3Q86UX7 667 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 SPATS2Q86XZ4 545 aaKnown RBP3.31□□□□□ -1.88
VRK3-204ENST00000593912 FBXO39Q8N4B4 442 aa3.31□□□□□ -1.88
VRK3-204ENST00000593912 ASAP3Q8TDY4 903 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms