RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 NIPA2Q8N8Q9 360 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 MRPL43Q8N983 215 aaKnown RBP11.85□□□□□ -0.51
VMP1-207ENST00000588131 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.85□□□□□ -0.51
VMP1-207ENST00000588131 FNIP1Q8TF40 1166 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 GIPC2Q8TF65 315 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 KRT35Q92764 455 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 CD101Q93033 1021 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 FAM149B1Q96BN6 582 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 HES6Q96HZ4 224 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 SPATA17Q96L03 361 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 CFAP57Q96MR6 1250 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 SLC2A13Q96QE2 648 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 ADAM33Q9BZ11 813 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 RAB6CQ9H0N0 254 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 ASNSD1Q9NWL6 643 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 MSRAQ9UJ68 235 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 YIPF1Q9Y548 306 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 IRAK3Q9Y616 596 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 GREB1Q4ZG55 1949 aa11.85□□□□□ -0.51
VMP1-207ENST00000588131 SLC38A8A6NNN8 435 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 TGM5O43548 720 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 SRGAP2O75044 1071 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 URI1O94763 535 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 LTFP02788 710 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 GLI1P08151 1106 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 SPATA31D3P0C874 917 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 CTNNA2P26232 953 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 SLC1A1P43005 524 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 TUFMP49411 452 aaKnown RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 ZNF143P52747 638 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 YWHAZP63104 245 aaKnown RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 PITX1P78337 314 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 PIGHQ14442 188 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 RPS6KA1Q15418 735 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 OTUD1Q5VV17 481 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 PPP2R2DQ66LE6 453 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 CC2D1AQ6P1N0 951 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 LILRA6Q6PI73 481 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 SPATA31D4Q6ZUB0 917 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 DENND5BQ6ZUT9 1274 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 ARCQ7LC44 396 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 SCD5Q86SK9 330 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 TCEAL8Q8IYN2 117 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 IRGQQ8WZA9 623 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 PSMB7Q99436 277 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 CNPY3Q9BT09 278 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 DDX23Q9BUQ8 820 aaKnown RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 EMILIN2Q9BXX0 1053 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 NGRNQ9NPE2 291 aaKnown RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.84□□□□□ -0.51
VMP1-207ENST00000588131 IL37Q9NZH6 218 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 HSFX1Q9UBD0 423 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 LCMT1Q9UIC8 334 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 SNX12Q9UMY4 172 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 NAALADL1Q9UQQ1 740 aa11.84□□□□□ -0.51
VMP1-207ENST00000588131 FARP1Q9Y4F1 1045 aaPredicted RBP11.84□□□□□ -0.51
VMP1-207ENST00000588131 FAM92AA1XBS5 289 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 EPOPA6NHQ4 379 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 PRRG1O14668 218 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 ZNF185O15231 689 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 SART1O43290 800 aaKnown RBP11.83□□□□□ -0.52
VMP1-207ENST00000588131 LRCH4O75427 683 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 ADH1AP07327 375 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 KLRC2P26717 231 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 SDC4P31431 198 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 CXCR5P32302 372 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 ELF1P32519 619 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 CTNNA1P35221 906 aaKnown RBP11.83□□□□□ -0.52
VMP1-207ENST00000588131 MATKP42679 507 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 PTPN9P43378 593 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 YWHAGP61981 247 aaKnown RBP eCLIP11.83□□□□□ -0.52
VMP1-207ENST00000588131 ATP11AP98196 1134 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 TWF1Q12792 350 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 CDO1Q16878 200 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 SYPL2Q5VXT5 272 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 BSPRYQ5W0U4 402 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 TXNRD3NBQ6F5E7 133 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 MICAL1Q8TDZ2 1067 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 ARNTL2Q8WYA1 636 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 EDEM1Q92611 657 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 ALG3Q92685 438 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 OSBPL9Q96SU4 736 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 TBCBQ99426 244 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 PRO3102Q9H379 93 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 NMUR1Q9HB89 426 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 POPDC2Q9HBU9 364 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 GMIPQ9P107 970 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 CALCOCO1Q9P1Z2 691 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 FBXW11Q9UKB1 542 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 SCML2Q9UQR0 700 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 INSL5Q9Y5Q6 135 aa11.83□□□□□ -0.52
VMP1-207ENST00000588131 TNRC18O15417 2968 aaPredicted RBP11.82□□□□□ -0.52
VMP1-207ENST00000588131 A0A1W2PQH9 124 aa11.82□□□□□ -0.52
VMP1-207ENST00000588131 MIF4GDA9UHW6 222 aaKnown RBP11.82□□□□□ -0.52
VMP1-207ENST00000588131 KCNK3O14649 394 aa11.82□□□□□ -0.52
VMP1-207ENST00000588131 LPXNO60711 386 aa11.82□□□□□ -0.52
VMP1-207ENST00000588131 RTN3O95197 1032 aaPredicted RBP11.82□□□□□ -0.52
VMP1-207ENST00000588131 HMGA1P17096 107 aaKnown RBP11.82□□□□□ -0.52
VMP1-207ENST00000588131 YWHAQP27348 245 aa11.82□□□□□ -0.52
VMP1-207ENST00000588131 NOS2P35228 1153 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms