RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 IL37Q9NZH6 218 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 DNMT3LQ9UJW3 386 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 STRIP2Q9ULQ0 834 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 MYH10P35580 1976 aa11.46□□□□□ -0.58
CLIP3-203ENST00000586457 NUP210Q8TEM1 1887 aaPredicted RBP11.46□□□□□ -0.58
CLIP3-203ENST00000586457 A0A1W2PQH9 124 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 M0QYV0 167 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 XPO1O14980 1071 aaKnown RBP11.45□□□□□ -0.58
CLIP3-203ENST00000586457 ZBED1O96006 694 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 LCP1P13796 627 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 TCF3P15923 654 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 DRD1P21728 446 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 EEF1GP26641 437 aaKnown RBP11.45□□□□□ -0.58
CLIP3-203ENST00000586457 CXCL12P48061 93 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 CCR3P51677 355 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 COG7P83436 770 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 PDE4CQ08493 712 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 CNGA2Q16280 664 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 STX1AQ16623 288 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 CCDC186Q7Z3E2 898 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 ARHGEF19Q8IW93 802 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 KIAA1958Q8N8K9 716 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 CLDN23Q96B33 292 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 OTUB2Q96DC9 234 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 PCMTD1Q96MG8 357 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-203ENST00000586457 PDCL3Q9H2J4 239 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 LINC00597Q9H2U6 94 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 NDST4Q9H3R1 872 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 ST7Q9NRC1 585 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 FAM86C1Q9NVL1 165 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 APEX2Q9UBZ4 518 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 NFE2L3Q9Y4A8 694 aa11.45□□□□□ -0.58
CLIP3-203ENST00000586457 FAM92AA1XBS5 289 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 GTPBP10A4D1E9 387 aaKnown RBP11.44□□□□□ -0.58
CLIP3-203ENST00000586457 THAP12O43422 761 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 LETM1O95202 739 aaPredicted RBP11.44□□□□□ -0.58
CLIP3-203ENST00000586457 ZDHHC11BP0C7U3 371 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 SLC9A1P19634 815 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 PTMSP20962 102 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 GJA4P35212 333 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 GALK1P51570 392 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 SNX16P57768 344 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 YWHAGP61981 247 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLIP3-203ENST00000586457 PTK2Q05397 1052 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 USP4Q13107 963 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 MTAPQ13126 283 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 ANO4Q32M45 955 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 EML3Q32P44 896 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 FKBP15Q5T1M5 1219 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 TRIM65Q6PJ69 517 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 LCLAT1Q6UWP7 414 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 GPRIN1Q7Z2K8 1008 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 ALYREFQ86V81 257 aaKnown RBP11.44□□□□□ -0.58
CLIP3-203ENST00000586457 MIB1Q86YT6 1006 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 ADGRG2Q8IZP9 1017 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 LMO3Q8TAP4 145 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 ENOX1Q8TC92 643 aaKnown RBP11.44□□□□□ -0.58
CLIP3-203ENST00000586457 CD101Q93033 1021 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 HPS4Q9NQG7 708 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 OLA1Q9NTK5 396 aaKnown RBP11.44□□□□□ -0.58
CLIP3-203ENST00000586457 CLIC5Q9NZA1 410 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 RASAL2Q9UJF2 1139 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 FBXO4Q9UKT5 387 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 TICRRQ7Z2Z1 1910 aa11.44□□□□□ -0.58
CLIP3-203ENST00000586457 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 HHLA1C9JL84 531 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 O00370 1275 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 TRDMT1O14717 391 aaKnown RBP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 SCAMP3O14828 347 aaKnown RBP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 OLFM2O95897 454 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 TBX18O95935 607 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 CHRNB1P11230 501 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 BRD2P25440 801 aaKnown RBP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 GNA15P30679 374 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 KRT9P35527 623 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 BPIFB4P59827 614 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 GAD2Q05329 585 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 ADIGQ0VDE8 80 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 EFEMP1Q12805 493 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 FBXO43Q4G163 708 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 TCP11X2Q5H9J9 407 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 KLHDC10Q6PID8 442 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 TXNDC11Q6PKC3 985 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 SPEM1Q8N4L4 309 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 KAT5Q92993 513 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 NKD2Q969F2 451 aaPredicted RBP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 NOX5Q96PH1 765 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 ULBP1Q9BZM6 244 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 DCLK3Q9C098 648 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 CHRDQ9H2X0 955 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 SEMA4AQ9H3S1 761 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 CYLDQ9NQC7 956 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 ABCC13Q9NSE7 274 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 SAMSN1Q9NSI8 373 aaKnown RBP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLIP3-203ENST00000586457 DLGAP2Q9P1A6 1054 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 NUDT5Q9UKK9 219 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 SLC8A2Q9UPR5 921 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 ZNF510Q9Y2H8 683 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 CEP83Q9Y592 693 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms