RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 RAB41Q5JT25 222 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 DENND1BQ6P3S1 775 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 SLC47A2Q86VL8 602 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 FAM71AQ8IYT1 594 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 TMEM105Q8N8V8 129 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 TTC16Q8NEE8 873 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 NEK11Q8NG66 645 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 RIN3Q8TB24 985 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 OVCA2Q8WZ82 227 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 RMDN1Q96DB5 314 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 NAP1L5Q96NT1 182 aaPredicted RBP16.65■□□□□ 0.26
CHD3-215ENST00000572750 LRRC3BQ96PB8 259 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 COMMD8Q9NX08 183 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 CHORDC1Q9UHD1 332 aaPredicted RBP16.65■□□□□ 0.26
CHD3-215ENST00000572750 SCML2Q9UQR0 700 aa16.65■□□□□ 0.26
CHD3-215ENST00000572750 A0A1B0GTH6 734 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 DPYSL4O14531 572 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 MED7O43513 233 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 USP17L7P0C7H9 530 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 ZDHHC11BP0C7U3 371 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 CLCN1P35523 988 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 PPP3CCP48454 512 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 TKTL1P51854 596 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 FANCCQ00597 558 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 FILIP1LQ4L180 1135 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 CCDC186Q7Z3E2 898 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 PASD1Q8IV76 773 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 RNF214Q8ND24 703 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 ZNF606Q8WXB4 792 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 CNTNAP3BQ96NU0 1288 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 STK33Q9BYT3 514 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 CNTNAP3Q9BZ76 1288 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 ULBP1Q9BZM6 244 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 CCSER2Q9H7U1 834 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 NMUR1Q9HB89 426 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 OSER1Q9NX31 292 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 USP3Q9Y6I4 520 aa16.64■□□□□ 0.25
CHD3-215ENST00000572750 A0A1W2PQH9 124 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 COCHO43405 550 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 OLFM2O95897 454 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 PSMC3P17980 439 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 HDCP19113 662 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 WEE1P30291 646 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 JAM2P57087 298 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 GPC5P78333 572 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 PTK2Q05397 1052 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 PMF1Q6P1K2 205 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 SIX6OS1Q8N1H7 587 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 CELF5Q8N6W0 485 aaKnown RBP16.63■□□□□ 0.25
CHD3-215ENST00000572750 DEPDC1BQ8WUY9 529 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 SLC35F5Q8WV83 523 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 NDRG1Q92597 394 aaKnown RBP16.63■□□□□ 0.25
CHD3-215ENST00000572750 E2F7Q96AV8 911 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 ZFYVE19Q96K21 471 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 UBXN6Q9BZV1 441 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 RNF38Q9H0F5 515 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 LRRC4Q9HBW1 653 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 TLR8Q9NR97 1041 aaKnown RBP16.63■□□□□ 0.25
CHD3-215ENST00000572750 TDP1Q9NUW8 608 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 SMPD4Q9NXE4 827 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 USP24Q9UPU5 2620 aa16.63■□□□□ 0.25
CHD3-215ENST00000572750 CHD8Q9HCK8 2581 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 SOBPA7XYQ1 873 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 TLR5O60602 858 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 GABBR2O75899 941 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 GFPT2O94808 682 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 LCP1P13796 627 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 CYP11B1P15538 503 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 GDI1P31150 447 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 PDE6CP51160 858 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 ZNF445P59923 1031 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 FCHO2Q0JRZ9 810 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 USP4Q13107 963 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 HECTD3Q5T447 861 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 SNX30Q5VWJ9 437 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 SCD5Q86SK9 330 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 MFSD6LQ8IWD5 586 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 YAF2Q8IY57 180 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 BPIFB1Q8TDL5 484 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 KCTD13Q8WZ19 329 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 SPAG5Q96R06 1193 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 TRMT61BQ9BVS5 477 aaKnown RBP16.62■□□□□ 0.25
CHD3-215ENST00000572750 BRD9Q9H8M2 597 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 KIF9Q9HAQ2 790 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 SLC2A4RGQ9NR83 387 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 CYTH4Q9UIA0 394 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 NAGPAQ9UK23 515 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 FBXL21Q9UKT6 434 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 CA14Q9ULX7 337 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 ARHGAP26Q9UNA1 814 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 CPQQ9Y646 472 aa16.62■□□□□ 0.25
CHD3-215ENST00000572750 FAM170AA1A519 330 aa16.61■□□□□ 0.25
CHD3-215ENST00000572750 SCAMP3O14828 347 aaKnown RBP16.61■□□□□ 0.25
CHD3-215ENST00000572750 ZBED1O96006 694 aa16.61■□□□□ 0.25
CHD3-215ENST00000572750 MBL2P11226 248 aaPredicted RBP16.61■□□□□ 0.25
CHD3-215ENST00000572750 PFKLP17858 780 aa16.61■□□□□ 0.25
CHD3-215ENST00000572750 SOX5P35711 763 aa16.61■□□□□ 0.25
CHD3-215ENST00000572750 GPD2P43304 727 aa16.61■□□□□ 0.25
CHD3-215ENST00000572750 TUBP50607 506 aa16.61■□□□□ 0.25
CHD3-215ENST00000572750 NUBP1P53384 320 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms