RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 DERAQ9Y315 318 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 BPTFQ12830 3046 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 TNRC6BQ9UPQ9 1833 aaKnown RBP12.06□□□□□ -0.48
CLN3-226ENST00000567160 STX10O60499 249 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 ALDH1A2O94788 518 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 SERPINC1P01008 464 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 AFPP02771 609 aaKnown RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 BCKDHBP21953 392 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 CYP4F8P98187 520 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 FANCCQ00597 558 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 MYL7Q01449 175 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 TAF12Q16514 161 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 VWA3BQ502W6 1294 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 MIIPQ5JXC2 388 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 SPDYCQ5MJ68 293 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 TRIM68Q6AZZ1 485 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 ANO7Q6IWH7 933 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 RABEPKQ7Z6M1 372 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 CMTM8Q8IZV2 173 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 CEP76Q8TAP6 659 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 CD101Q93033 1021 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 CHFRQ96EP1 664 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 UBL7Q96S82 380 aaPredicted RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 GTPBP2Q9BX10 602 aaKnown RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 SMG9Q9H0W8 520 aaKnown RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 FBRSL1Q9HCM7 1045 aaKnown RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 DPP3Q9NY33 737 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 HSFX1Q9UBD0 423 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 UBQLN1Q9UMX0 589 aaKnown RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 RAXQ9Y2V3 346 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 C2CD2Q9Y426 696 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 PCDHB9Q9Y5E1 797 aa12.05□□□□□ -0.48
CLN3-226ENST00000567160 URB1O60287 2271 aaKnown RBP12.05□□□□□ -0.48
CLN3-226ENST00000567160 DENND4CQ5VZ89 1909 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 ADAMTS9Q9P2N4 1935 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CELSR3Q9NYQ7 3312 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 OTOL1A6NHN0 477 aaPredicted RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 TK2O00142 265 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 XPOTO43592 962 aaKnown RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 PHACTR2O75167 634 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CLSTN1O94985 981 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 ITGB3P05106 788 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CFIP05156 583 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 KRT19P08727 400 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 DDX6P26196 483 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-226ENST00000567160 GJA4P35212 333 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 FMO5P49326 533 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 MXI1P50539 228 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CLDN10P78369 228 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 GFPT1Q06210 699 aaPredicted RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 ENPEPQ07075 957 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 BYSLQ13895 437 aaKnown RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 ZBTB6Q15916 424 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CBWD6Q4V339 395 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CBWD3Q5JTY5 395 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CBWD5Q5RIA9 395 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 TDRD10Q5VZ19 366 aaKnown RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 LYSMD4Q5XG99 296 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 SCARA3Q6AZY7 606 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CCNI2Q6ZMN8 369 aaPredicted RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 SV2AQ7L0J3 742 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 APTXQ7Z2E3 356 aaKnown RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 TRAPPC11Q7Z392 1133 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 NT5DC4Q86YG4 428 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 C1orf127Q8N9H9 656 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 ADAMTS14Q8WXS8 1223 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 TSPAN18Q96SJ8 248 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 SLC46A2Q9BY10 475 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 CRISPLD1Q9H336 500 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 NDST4Q9H3R1 872 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 TMEM8AQ9HCN3 771 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-226ENST00000567160 TDP1Q9NUW8 608 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 SLC6A14Q9UN76 642 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 SLC27A5Q9Y2P5 690 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.04□□□□□ -0.48
CLN3-226ENST00000567160 SHROOM3Q8TF72 1996 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 TSC2P49815 1807 aa12.04□□□□□ -0.48
CLN3-226ENST00000567160 PTPRDP23468 1912 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 MTMR11A4FU01 709 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 GOLGA6L3A6NEY3 463 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 LGALS16A8MUM7 142 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 M0QZQ0 153 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 PPEF2O14830 753 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 VNN2O95498 520 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 C4BPAP04003 597 aaKnown RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 OR4Q2P0C623 313 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 ARSAP15289 507 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 POLR2BP30876 1174 aaKnown RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 GTF2H1P32780 548 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 PIK3CAP42336 1068 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 TUFMP49411 452 aaKnown RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 AP3M2P53677 418 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 UBASH3AP57075 661 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 MCCD1P59942 119 aaPredicted RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 TRIP6Q15654 476 aaKnown RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 DUOXA1Q1HG43 343 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 ZACNQ401N2 412 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 FILIP1LQ4L180 1135 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 KRT39Q6A163 491 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms