RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 KLHL23Q8NBE8 558 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 EXD1Q8NHP7 514 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 CLEC4CQ8WTT0 213 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 UBXN4Q92575 508 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 KRT35Q92764 455 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 KHSRPQ92945 711 aaKnown RBP eCLIP10.78□□□□□ -0.683e-6■■□□□ 12.7
USP3-219ENST00000561326 RBM41Q96IZ5 413 aaKnown RBP10.78□□□□□ -0.68
USP3-219ENST00000561326 RNPC3Q96LT9 517 aaKnown RBP10.78□□□□□ -0.68
USP3-219ENST00000561326 SAMD11Q96NU1 681 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 CLSTN3Q9BQT9 956 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 VN1R3Q9BXE9 311 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 NGRNQ9NPE2 291 aaKnown RBP10.78□□□□□ -0.68
USP3-219ENST00000561326 ABCC13Q9NSE7 274 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 TMEM30AQ9NV96 361 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 MTUS1Q9ULD2 1270 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 USP18Q9UMW8 372 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 SLC27A5Q9Y2P5 690 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 USP3Q9Y6I4 520 aa10.78□□□□□ -0.68
USP3-219ENST00000561326 PLXNA3P51805 1871 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 GOLGA6L10A0A0M3HER8 536 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 TNFRSF10BO14763 440 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 LRCH4O75427 683 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 ABLIM3O94929 683 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 CTSAP10619 480 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 NCAM1P13591 858 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 ATF2P15336 505 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 YWHAQP27348 245 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 GBP1P32455 592 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 CA8P35219 290 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 ALDH1A3P47895 512 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 PSEN1P49768 467 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 ATP11AP98196 1134 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 UBE3AQ05086 875 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 ZNF252P-AS1Q0IIN9 211 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 CDO1Q16878 200 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 LONRF2Q1L5Z9 754 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 BTBD8Q5XKL5 378 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 SCYL2Q6P3W7 929 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 RSPO2Q6UXX9 243 aaPredicted RBP10.77□□□□□ -0.69
USP3-219ENST00000561326 DENND5BQ6ZUT9 1274 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 SND1Q7KZF4 910 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP3-219ENST00000561326 STRADAQ7RTN6 431 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 GPRIN1Q7Z2K8 1008 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 ZNF572Q7Z3I7 529 aaPredicted RBP10.77□□□□□ -0.69
USP3-219ENST00000561326 CCDC50Q8IVM0 306 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 MAP7D3Q8IWC1 876 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 DEFB106AQ8N104 65 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 FAM172AQ8WUF8 416 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 CENPIQ92674 756 aaPredicted RBP10.77□□□□□ -0.69
USP3-219ENST00000561326 ALG3Q92685 438 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 PIWIL1Q96J94 861 aaKnown RBP10.77□□□□□ -0.69
USP3-219ENST00000561326 MS4A14Q96JA4 679 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 CFAP57Q96MR6 1250 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 SLC2A13Q96QE2 648 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 TBCBQ99426 244 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 SEPT5Q99719 369 aaPredicted RBP10.77□□□□□ -0.69
USP3-219ENST00000561326 EMILIN2Q9BXX0 1053 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 SCML2Q9UQR0 700 aa10.77□□□□□ -0.69
USP3-219ENST00000561326 WDR27A2RRH5 827 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 LINC01553A4QN01 128 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 YJEFN3A6XGL0 299 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 E7ENQ6 273 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 CCDC188H7C350 402 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 KRIT1O00522 736 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 PRRG1O14668 218 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 TRUB2O95900 331 aaKnown RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 FGGP02679 453 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 ADH1AP07327 375 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 PYGMP11217 842 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 RPL17P18621 184 aaKnown RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 DNAJB2P25686 324 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 MIPP30301 263 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 GJC1P36383 396 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 MAGEA10P43363 369 aaPredicted RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 SLC5A3P53794 718 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 TAS2R40P59535 323 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 YWHAGP61981 247 aaKnown RBP eCLIP10.76□□□□□ -0.69
USP3-219ENST00000561326 IFRD2Q12894 506 aaPredicted RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 VEPH1Q14D04 833 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 SHHQ15465 462 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 TAF12Q16514 161 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 C15orf59Q2T9L4 293 aaPredicted RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 BSPRYQ5W0U4 402 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 KCTD6Q8NC69 237 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 SPATA4Q8NEY3 305 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 SCAMP5Q8TAC9 235 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 RNF139Q8WU17 664 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 TEKT4Q8WW24 435 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 NDRG1Q92597 394 aaKnown RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 NT5C3BQ969T7 300 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 SLITRK1Q96PX8 696 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 NPY6RQ99463 290 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 C11orf84Q9BUA3 381 aaPredicted RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 UBE2OQ9C0C9 1292 aaKnown RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 ZBP1Q9H171 429 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 ZWILCHQ9H900 591 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 RXFP1Q9HBX9 757 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 TLR8Q9NR97 1041 aaKnown RBP10.76□□□□□ -0.69
USP3-219ENST00000561326 HOMER3Q9NSC5 361 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 IL37Q9NZH6 218 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms