RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 C15orf59Q2T9L4 293 aaPredicted RBP11.75□□□□□ -0.53
USP3-218ENST00000560202 SH3PXD2AQ5TCZ1 1133 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 LRRC38Q5VT99 294 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 DCAF12L1Q5VU92 463 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SDHAF4Q5VUM1 108 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 TPGS2Q68CL5 300 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 FAM109BQ6ICB4 259 aaPredicted RBP11.75□□□□□ -0.53
USP3-218ENST00000560202 HFE2Q6ZVN8 426 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 BHLHA9Q7RTU4 235 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 DEFB106AQ8N104 65 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 NUP93Q8N1F7 819 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 CEP112Q8N8E3 955 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 MS4A14Q96JA4 679 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SLC2A13Q96QE2 648 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 PLVAPQ9BX97 442 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 POPDC2Q9HBU9 364 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 RXFP1Q9HBX9 757 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 FNIP2Q9P278 1114 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 PDE2AO00408 941 aaPredicted RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 LTFP02788 710 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 FYNP06241 537 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 ATF2P15336 505 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 NOS2P35228 1153 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 PCK1P35558 622 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 PAFAH1B1P43034 410 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 TUFMP49411 452 aaKnown RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 RPL10AP62906 217 aaKnown RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 ATP11AP98196 1134 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 CREMQ03060 361 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 CKAP4Q07065 602 aaKnown RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 IFRD2Q12894 506 aaPredicted RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 ZNF211Q13398 564 aaPredicted RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 HADHQ16836 314 aaKnown RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 CDO1Q16878 200 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 CCDC181Q5TID7 509 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 TMC7Q7Z402 723 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 RASGEF1CQ8N431 466 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 MNS1Q8NEH6 495 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 FAM172AQ8WUF8 416 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 SPATA17Q96L03 361 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 C17orf80Q9BSJ5 609 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 C11orf84Q9BUA3 381 aaPredicted RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 ALG13Q9NP73 1137 aaKnown RBP11.74□□□□□ -0.53
USP3-218ENST00000560202 EHD2Q9NZN4 543 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 HSFX1Q9UBD0 423 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 LZTS1Q9Y250 596 aa11.74□□□□□ -0.53
USP3-218ENST00000560202 KIAA1671Q9BY89 1806 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 CAPN9O14815 690 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 TEX28O15482 410 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 ARHGEF15O94989 841 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 SEC24AO95486 1093 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 CXCL14O95715 111 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 PYGMP11217 842 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 TFE3P19532 575 aaPredicted RBP11.73□□□□□ -0.53
USP3-218ENST00000560202 MIPP30301 263 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 CA8P35219 290 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 GJC1P36383 396 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 SLC25A11Q02978 314 aaKnown RBP11.73□□□□□ -0.53
USP3-218ENST00000560202 SLC25A52Q3SY17 297 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 DCAF6Q58WW2 860 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 SYPL2Q5VXT5 272 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 DENND5BQ6ZUT9 1274 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 KATNAL2Q8IYT4 538 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 STKLD1Q8NE28 680 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 ACTRT1Q8TDG2 376 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 GPR152Q8TDT2 470 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 CENPIQ92674 756 aaPredicted RBP11.73□□□□□ -0.53
USP3-218ENST00000560202 GOLGA1Q92805 767 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 NCAPGQ9BPX3 1015 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 UBE2OQ9C0C9 1292 aaKnown RBP11.73□□□□□ -0.53
USP3-218ENST00000560202 FBXO44Q9H4M3 255 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 NGRNQ9NPE2 291 aaKnown RBP11.73□□□□□ -0.53
USP3-218ENST00000560202 SMARCAL1Q9NZC9 954 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 IL37Q9NZH6 218 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 NAALADL1Q9UQQ1 740 aa11.73□□□□□ -0.53
USP3-218ENST00000560202 CTAGE15A4D2H0 777 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 C5orf67F2Z3F1 127 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 ATP8B1O43520 1251 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 RTN3O95197 1032 aaPredicted RBP11.72□□□□□ -0.53
USP3-218ENST00000560202 TRUB2O95900 331 aaKnown RBP11.72□□□□□ -0.53
USP3-218ENST00000560202 RB1P06400 928 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 CA3P07451 260 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 KRT7P08729 469 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 CNPP09543 421 aaKnown RBP11.72□□□□□ -0.53
USP3-218ENST00000560202 CTAGE8P0CG41 777 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 ATF6P18850 670 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 IL1R2P27930 398 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 SULT1E1P49888 294 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 ERVFC1P60507 584 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 USP46P62068 366 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 UBE3AQ05086 875 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 ATP13A4Q4VNC1 1196 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 RAB6CQ53S08 254 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 BSPRYQ5W0U4 402 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 TXNRD3NBQ6F5E7 133 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 AADACL2Q6P093 401 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 STRADAQ7RTN6 431 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 POLNQ7Z5Q5 900 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 SPRED2Q7Z698 418 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 CTAGE6Q86UF2 777 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms