RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13C-208ENST00000559119 ARFGAP1Q8N6T3 406 aa5.55□□□□□ -1.52
VPS13C-208ENST00000559119 ZBTB45Q96K62 511 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-208ENST00000559119 AIFM3Q96NN9 605 aa5.55□□□□□ -1.52
VPS13C-208ENST00000559119 ACO2Q99798 780 aaKnown RBP5.55□□□□□ -1.52
VPS13C-208ENST00000559119 TRIM36Q9NQ86 728 aa5.55□□□□□ -1.52
VPS13C-208ENST00000559119 GAR1Q9NY12 217 aaKnown RBP5.55□□□□□ -1.52
VPS13C-208ENST00000559119 LOC102723971A0A1B0GUV8 181 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 CD3EAPO15446 510 aaKnown RBP5.54□□□□□ -1.52
VPS13C-208ENST00000559119 CTSAP10619 480 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 IBSPP21815 317 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-208ENST00000559119 THBS3P49746 956 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 CFHR3Q02985 330 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 CFHR1Q03591 330 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 SLC9C1Q4G0N8 1177 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 ANO6Q4KMQ2 910 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 C9orf47Q6ZRZ4 202 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 ACRBPQ8NEB7 543 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 ZNF548Q8NEK5 533 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-208ENST00000559119 SUCLG2Q96I99 432 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 LYZL4Q96KX0 146 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 TRMOQ9BU70 441 aa5.54□□□□□ -1.52
VPS13C-208ENST00000559119 DNMT3BQ9UBC3 853 aaKnown RBP5.54□□□□□ -1.52
VPS13C-208ENST00000559119 FAM90A8PA6NJQ4 464 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 EXOC5O00471 708 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 CCP110O43303 1012 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 CNOT3O75175 753 aaKnown RBP5.53□□□□□ -1.52
VPS13C-208ENST00000559119 TULP3O75386 442 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 RASSF9O75901 435 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 FAM90A13PP0C7W8 464 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 FAM90A24PP0C7X0 464 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 THBS4P35443 961 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 KRTAP10-7P60409 375 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-208ENST00000559119 TIAL1Q01085 375 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS13C-208ENST00000559119 SEMA3AQ14563 771 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 MFSD13AQ14CX5 517 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 PTPROQ16827 1216 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 COLCA1Q6ZS62 124 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 KCTD20Q7Z5Y7 419 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 OR56A3Q8NH54 315 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 IL31RAQ8NI17 732 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 SLC35G2Q8TBE7 412 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 ZFYVE19Q96K21 471 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 RHOBTB2Q9BYZ6 727 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 NKX1-2Q9UD57 310 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-208ENST00000559119 ZNF180Q9UJW8 692 aa5.53□□□□□ -1.52
VPS13C-208ENST00000559119 E2F8A0AVK6 867 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 MBD3L4A6NDZ8 208 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 MBD3L3A6NE82 208 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 B4DGG1 531 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 H7C4K7 107 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 CLIC1O00299 241 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 HGFP14210 728 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 ATF7P17544 494 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 TACR3P29371 465 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 PTDSS1P48651 473 aaKnown RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 HTR6P50406 440 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 GATMP50440 423 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 PGDP52209 483 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 AGFG1P52594 562 aaKnown RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 ITGA8P53708 1063 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 YPEL5P62699 121 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 HSF1Q00613 529 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 PIN1Q13526 163 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 STIM1Q13586 685 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 PFKFB3Q16875 520 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 B3GNT9Q6UX72 402 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 C12orf76Q8N812 135 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 SPATA3Q8NHX4 192 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 JPH3Q8WXH2 748 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-208ENST00000559119 MAML1Q92585 1016 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 WDYHV1Q96HA8 205 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 HIC2Q96JB3 615 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 TAAR9Q96RI9 348 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 FAM234AQ9H0X4 552 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 TTC3P53804 2025 aa5.52□□□□□ -1.53
VPS13C-208ENST00000559119 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-208ENST00000559119 PRR23D1E9PI22 279 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-208ENST00000559119 PYCARD-AS1I3L0S3 204 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 TBX3O15119 743 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 RRP9O43818 475 aaKnown RBP5.51□□□□□ -1.53
VPS13C-208ENST00000559119 ALDH1L1O75891 902 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 PIAS2O75928 621 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 PRR23D2P0DMB1 279 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-208ENST00000559119 CD19P15391 556 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 KLRC1P26715 233 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 CPA2P48052 419 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 KRTAP10-6P60371 365 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-208ENST00000559119 SLC14A1Q13336 389 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 LVRNQ6Q4G3 990 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 NPNTQ6UXI9 565 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 CHPFQ8IZ52 775 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 ZBTB34Q8NCN2 500 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 MPLKIPQ8TAP9 179 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 SMCR8Q8TEV9 937 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-208ENST00000559119 STK31Q9BXU1 1019 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 B3GNT5Q9BYG0 378 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 BRINP2Q9C0B6 783 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 ATP6V0A4Q9HBG4 840 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 SACM1LQ9NTJ5 587 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms