RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 GOLGA7BQ2TAP0 167 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 GAB4Q2WGN9 574 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 C2orf27AQ580R0 203 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 C1orf228Q6PIY5 440 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 RHBDF2Q6PJF5 856 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 C12orf40Q86WS4 652 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 BBS7Q8IWZ6 715 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 ADGRG2Q8IZP9 1017 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 CCDC33Q8N5R6 958 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 ZBTB44Q8NCP5 570 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 RPLP0P6Q8NHW5 317 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 ZFRQ96KR1 1074 aaKnown RBP13.21□□□□□ -0.29
SMAD3-208ENST00000558827 HHIPQ96QV1 700 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 DUSP16Q9BY84 665 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 TLR8Q9NR97 1041 aaKnown RBP13.21□□□□□ -0.29
SMAD3-208ENST00000558827 NCDNQ9UBB6 729 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 PCDHGA2Q9Y5H1 932 aa13.21□□□□□ -0.29
SMAD3-208ENST00000558827 PIK3R2O00459 728 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 ZDHHC11BP0C7U3 371 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 RARGP13631 454 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 MCCD1P59942 119 aaPredicted RBP13.2□□□□□ -0.3
SMAD3-208ENST00000558827 UBE2HP62256 183 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 PAK1Q13153 545 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 LY6G5CQ5SRR4 150 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 EMC10Q5UCC4 262 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 RRAGAQ7L523 313 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 SCD5Q86SK9 330 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 TTC30AQ86WT1 665 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 ARHGEF19Q8IW93 802 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 ELOA2Q8IYF1 753 aaPredicted RBP13.2□□□□□ -0.3
SMAD3-208ENST00000558827 OVCA2Q8WZ82 227 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 NELL1Q92832 810 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 ERLEC1Q96DZ1 483 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 CEP63Q96MT8 703 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 SEMA4AQ9H3S1 761 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 FBXO44Q9H4M3 255 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 METTL14Q9HCE5 456 aaKnown RBP13.2□□□□□ -0.3
SMAD3-208ENST00000558827 NAGPAQ9UK23 515 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 SMG5Q9UPR3 1016 aaKnown RBP13.2□□□□□ -0.3
SMAD3-208ENST00000558827 SLC8A2Q9UPR5 921 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 SCML2Q9UQR0 700 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 COQ4Q9Y3A0 265 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 PCDHB4Q9Y5E5 795 aa13.2□□□□□ -0.3
SMAD3-208ENST00000558827 FRYLO94915 3013 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 MYO18AQ92614 2054 aaKnown RBP13.19□□□□□ -0.3
SMAD3-208ENST00000558827 FAM92AA1XBS5 289 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 RNF225M0QZC1 329 aaPredicted RBP13.19□□□□□ -0.3
SMAD3-208ENST00000558827 TRIM24O15164 1050 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 LILRB5O75023 590 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 TCF3P15923 654 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 PFKLP17858 780 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 DRD1P21728 446 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 KIF11P52732 1056 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 SIM2Q14190 667 aaPredicted RBP13.19□□□□□ -0.3
SMAD3-208ENST00000558827 PPP2R5DQ14738 602 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 ANO4Q32M45 955 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 C10orf120Q5SQS8 335 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 PIGZQ86VD9 579 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 TMEM25Q86YD3 366 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 MIB1Q86YT6 1006 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 PPM1KQ8N3J5 372 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 RUBCNQ92622 972 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 BHMTQ93088 406 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 KLF16Q9BXK1 252 aaPredicted RBP13.19□□□□□ -0.3
SMAD3-208ENST00000558827 GTPBP4Q9BZE4 634 aaKnown RBP13.19□□□□□ -0.3
SMAD3-208ENST00000558827 COMMD8Q9NX08 183 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 KIAA1468Q9P260 1216 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 INVSQ9Y283 1065 aa13.19□□□□□ -0.3
SMAD3-208ENST00000558827 E2F8A0AVK6 867 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 BICDL2A1A5D9 508 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 K7EQS6 105 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 SLC9A3R1O14745 358 aaPredicted RBP13.18□□□□□ -0.3
SMAD3-208ENST00000558827 ADH5P11766 374 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 ATP5C1P36542 298 aaKnown RBP13.18□□□□□ -0.3
SMAD3-208ENST00000558827 ANP32AP39687 249 aaKnown RBP13.18□□□□□ -0.3
SMAD3-208ENST00000558827 RGS7P49802 495 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 NRLP54845 237 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 PDE4CQ08493 712 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 EFEMP1Q12805 493 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 KCNH2Q12809 1159 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 SNX30Q5VWJ9 437 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 TMEM270Q6UE05 265 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 MAMSTRQ6ZN01 415 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 TPGS1Q6ZTW0 290 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 CEP68Q76N32 757 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 DDX42Q86XP3 938 aaKnown RBP eCLIP13.18□□□□□ -0.3
SMAD3-208ENST00000558827 SYNPOQ8N3V7 929 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 TFAP2BQ92481 460 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 NT5C1BQ96P26 610 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 CRACR2AQ9BSW2 395 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 IER2Q9BTL4 223 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 ULBP1Q9BZM6 244 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 DNAI2Q9GZS0 605 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 RASAL2Q9UJF2 1139 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 TSPAN16Q9UKR8 245 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 CEP250Q9BV73 2442 aa13.18□□□□□ -0.3
SMAD3-208ENST00000558827 LCP1P13796 627 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 BRD2P25440 801 aaKnown RBP13.17□□□□□ -0.3
SMAD3-208ENST00000558827 TIE1P35590 1138 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 TKTL1P51854 596 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms