RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 GALTP07902 379 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 MYBL2P10244 700 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 KRT10P13645 584 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 FGFR3P22607 806 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 TNNT3P45378 269 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 CACNA2D1P54289 1103 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 HDAC4P56524 1084 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 MRPL58Q14197 206 aaKnown RBP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 HLTFQ14527 1009 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 KCNT1Q5JUK3 1230 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 VARS2Q5ST30 1063 aaKnown RBP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 FAM171A1Q5VUB5 890 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 KAZNQ674X7 775 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 DUPD1Q68J44 220 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 SCYL2Q6P3W7 929 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 FUT10Q6P4F1 479 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 DRICH1Q6PGQ1 229 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 BBS12Q6ZW61 710 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 CYP4V2Q6ZWL3 525 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 ANKS1BQ7Z6G8 1248 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 DEFB106AQ8N104 65 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 ACSF2Q96CM8 615 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 FUBP3Q96I24 572 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-233ENST00000557529 PEBP4Q96S96 227 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 TMEM209Q96SK2 561 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 TRIM51Q9BSJ1 452 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 FAM129AQ9BZQ8 928 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 ACBD3Q9H3P7 528 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 MARCH5Q9NX47 278 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 NFU1Q9UMS0 254 aa13.04□□□□□ -0.32
SHMT2-233ENST00000557529 SCN5AQ14524 2016 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 TET1Q8NFU7 2136 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 CARNS1A5YM72 827 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 ZNF487B1APH4 448 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 MAP2K7O14733 419 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 AMHP03971 560 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 NDUFV1P49821 464 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 SULT1E1P49888 294 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 ARSEP51690 589 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 CDH6P55285 790 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 SMARCB1Q12824 385 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 SNX1Q13596 522 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 TFDP2Q14188 446 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 KRT81Q14533 505 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 CASP8Q14790 479 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 PPP1R7Q15435 360 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 CTXN3Q4LDR2 81 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 SLC39A12Q504Y0 691 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 DCAF6Q58WW2 860 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 ERMARDQ5T6L9 678 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 PM20D1Q6GTS8 502 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 VSTM1Q6UX27 236 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.03□□□□□ -0.32
SHMT2-233ENST00000557529 SND1Q7KZF4 910 aaKnown RBP eCLIP13.03□□□□□ -0.322e-6■■□□□ 11.8
SHMT2-233ENST00000557529 GPRIN1Q7Z2K8 1008 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 RFX6Q8HWS3 928 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 PSTKQ8IV42 348 aaKnown RBP13.03□□□□□ -0.32
SHMT2-233ENST00000557529 GSPT2Q8IYD1 628 aaKnown RBP13.03□□□□□ -0.32
SHMT2-233ENST00000557529 ATG4AQ8WYN0 398 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 NT5C3BQ969T7 300 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 NPY6RQ99463 290 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 MAK16Q9BXY0 300 aaKnown RBP13.03□□□□□ -0.32
SHMT2-233ENST00000557529 VIPAS39Q9H9C1 493 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 CHST7Q9NS84 486 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.03□□□□□ -0.32
SHMT2-233ENST00000557529 TMEM30AQ9NV96 361 aa13.03□□□□□ -0.32
SHMT2-233ENST00000557529 R3HDM2Q9Y2K5 976 aaKnown RBP13.03□□□□□ -0.32
SHMT2-233ENST00000557529 CAPN9O14815 690 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 DAPK3O43293 454 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 LIASO43766 372 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 DGKIO75912 1065 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 LTFP02788 710 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 USP17L7P0C7H9 530 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 RAG1P15918 1043 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 GRIK1P39086 918 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 MAGEA11P43364 429 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 KCNJ1P48048 391 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 ALDH7A1P49419 539 aaKnown RBP13.02□□□□□ -0.33
SHMT2-233ENST00000557529 BCAR1P56945 870 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 ANKS3Q6ZW76 656 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 BEND5Q7L4P6 421 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 CEP57Q86XR8 500 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 TMEM199Q8N511 208 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 FAM71BQ8TC56 605 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 CCHCR1Q8TD31 782 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 NKD2Q969F2 451 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-233ENST00000557529 CCDC114Q96M63 670 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 SNRNP25Q9BV90 132 aaKnown RBP13.02□□□□□ -0.33
SHMT2-233ENST00000557529 CALN1Q9BXU9 219 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 RHOBTB2Q9BYZ6 727 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 GPR62Q9BZJ7 368 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 DPH5Q9H2P9 285 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 DRG1Q9Y295 367 aaKnown RBP13.02□□□□□ -0.33
SHMT2-233ENST00000557529 PCDHB5Q9Y5E4 795 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 USP3Q9Y6I4 520 aa13.02□□□□□ -0.33
SHMT2-233ENST00000557529 DNAH12Q6ZR08 3092 aa13.01□□□□□ -0.33
SHMT2-233ENST00000557529 YJEFN3A6XGL0 299 aa13.01□□□□□ -0.33
SHMT2-233ENST00000557529 E7ENQ6 273 aa13.01□□□□□ -0.33
SHMT2-233ENST00000557529 TRIM66O15016 1216 aa13.01□□□□□ -0.33
SHMT2-233ENST00000557529 CST8O60676 142 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms