RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PCDHGC3Q9UN70 934 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 CCL26Q9Y258 94 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 CPQQ9Y646 472 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 NUP210Q8TEM1 1887 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 CBFA2T2O43439 604 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 OAS1P00973 400 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 ZDHHC11BP0C7U3 371 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 CCDC172P0C7W6 258 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 ATP5C1P36542 298 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 ACADSBP45954 432 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 PFKPQ01813 784 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SIGLEC14Q08ET2 396 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 ZNF268Q14587 947 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 MEA1Q16626 185 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 C10orf120Q5SQS8 335 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SNX30Q5VWJ9 437 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SCD5Q86SK9 330 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 TADA2BQ86TJ2 420 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 NOP9Q86U38 636 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SCUBE3Q8IX30 993 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 C1orf131Q8NDD1 294 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SH3RF2Q8TEC5 729 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 ZFYVE19Q96K21 471 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 LRRC3BQ96PB8 259 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 NUP58Q9BVL2 599 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 CNGB3Q9NQW8 809 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SEPT11Q9NVA2 429 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 OSER1Q9NX31 292 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 CA14Q9ULX7 337 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 ARHGAP26Q9UNA1 814 aa12.03□□□□□ -0.48
CCDC88C-212ENST00000556767 SPTBN5Q9NRC6 3674 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 E5RJQ4 531 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 LEFTY2O00292 366 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 SCAMP3O14828 347 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 MDM4O15151 490 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 GABBR2O75899 941 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 FBXO21O94952 628 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 OLFM2O95897 454 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 TBX18O95935 607 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 MMEP08473 750 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 IRF1P10914 325 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 FERP16591 822 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 TUBP50607 506 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 DAOAP59103 153 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC7A9P82251 487 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 EFEMP1Q12805 493 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 PDCLQ13371 301 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 MTF1Q14872 753 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 ARHGAP29Q52LW3 1261 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 PM20D1Q6GTS8 502 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 TRIM67Q6ZTA4 783 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 MIB1Q86YT6 1006 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 TMEM35BQ8NCS4 154 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CSGALNACT1Q8TDX6 532 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 EPS8L1Q8TE68 723 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 IPO4Q8TEX9 1081 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 STK32AQ8WU08 396 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 RNF139Q8WU17 664 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC20A1Q8WUM9 679 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CPLX3Q8WVH0 158 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 EDEM1Q92611 657 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 IRF7Q92985 503 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 PPP1R13BQ96KQ4 1090 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CDK5RAP1Q96SZ6 601 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC4A5Q9BY07 1137 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 LHX5Q9H2C1 402 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CYLDQ9NQC7 956 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC2A4RGQ9NR83 387 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CLIC5Q9NZA1 410 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CFAP97Q9P2B7 532 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 CYTH4Q9UIA0 394 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 RASAL2Q9UJF2 1139 aa12.02□□□□□ -0.49
CCDC88C-212ENST00000556767 FAM86C2PA6NEL3 165 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 TMEM221A6NGB7 291 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 LRRC53A6NM62 1247 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 YJEFN3A6XGL0 299 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 E7ENQ6 273 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 M0R296 226 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 STK25O00506 426 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 CHADO15335 359 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 IFNAR2P48551 515 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 SNX16P57768 344 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 CDR2Q01850 454 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 GOLGA8FQ08AF8 430 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 GOLGA8DPQ0D2H9 430 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 FCHO2Q0JRZ9 810 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 ZNF77Q15935 545 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 ASIC2Q16515 512 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 SFMBT2Q5VUG0 894 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 NAA35Q5VZE5 725 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 BSPRYQ5W0U4 402 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 OR6B2Q6IFH4 312 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 DDX42Q86XP3 938 aaKnown RBP eCLIP12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 ZNF677Q86XU0 584 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 FMNL3Q8IVF7 1028 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 SIX5Q8N196 739 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 WDTC1Q8N5D0 677 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 TTC8Q8TAM2 541 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 CLEC4CQ8WTT0 213 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms