RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 CREB1P16220 341 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 ZKSCAN1P17029 563 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-210ENST00000553693 DIO1P49895 249 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 PGDP52209 483 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 COPB1P53618 953 aaKnown RBP4.84□□□□□ -1.63
SCFD1-210ENST00000553693 LAMB3Q13751 1172 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 SLC29A2Q14542 456 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 LARS2Q15031 903 aaKnown RBP4.84□□□□□ -1.63
SCFD1-210ENST00000553693 PPP4R4Q6NUP7 873 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 KRT73Q86Y46 540 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 EFHD1Q9BUP0 239 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 ZNF287Q9HBT7 754 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 EID1Q9Y6B2 187 aa4.84□□□□□ -1.63
SCFD1-210ENST00000553693 GOLIM4O00461 696 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 APEHP13798 732 aaKnown RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 ATP5F1P24539 256 aaPredicted RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 CPT1AP50416 773 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 RPS16P62249 146 aaKnown RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 GHRHRQ02643 423 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 ZNF750Q32MQ0 723 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 DARS2Q6PI48 645 aaKnown RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 VSTM1Q6UX27 236 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 KCTD20Q7Z5Y7 419 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 MRPL10Q7Z7H8 261 aaKnown RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 RAVER1Q8IY67 606 aaKnown RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 LINC01465Q8N7H1 131 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 C9orf106Q8NAJ2 232 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 ZNF398Q8TD17 642 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 JDP2Q8WYK2 163 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 HS6ST2Q96MM7 605 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 TRNAU1APQ9NX07 287 aaKnown RBP4.83□□□□□ -1.64
SCFD1-210ENST00000553693 PI4KBQ9UBF8 816 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 FER1L4A9Z1Z3 1794 aa4.83□□□□□ -1.64
SCFD1-210ENST00000553693 GOLGA6CA6NDK9 693 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 GOLGA6BA6NDN3 693 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 RAB27BO00194 218 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 SPRY2O43597 315 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 ZBED1O96006 694 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 HRGP04196 525 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 GOLGA6DP0CG33 693 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 TXNP10599 105 aaKnown RBP4.82□□□□□ -1.64
SCFD1-210ENST00000553693 HGFP14210 728 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 TPH1P17752 444 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 GATMP50440 423 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 ITGA8P53708 1063 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 FAM193AP78312 1265 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 KCNB1Q14721 858 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 RABEP1Q15276 862 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 LRRC41Q15345 812 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 NPY5RQ15761 445 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 ST3GAL2Q16842 350 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 Q4G0T1 1027 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 C3orf38Q5JPI3 329 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 MEX3CQ5U5Q3 659 aaKnown RBP4.82□□□□□ -1.64
SCFD1-210ENST00000553693 RNF220Q5VTB9 566 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 ANO7Q6IWH7 933 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 MZT2AQ6P582 158 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 DCDC5Q6ZRR9 648 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 CCDC149Q6ZUS6 474 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 NANOGP1Q8N7R0 232 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 OSR1Q8TAX0 266 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-210ENST00000553693 APIPQ96GX9 242 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 SPRTNQ9H040 489 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-210ENST00000553693 GAR1Q9NY12 217 aaKnown RBP4.82□□□□□ -1.64
SCFD1-210ENST00000553693 GOLGA6AQ9NYA3 693 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 MGAT4CQ9UBM8 478 aa4.82□□□□□ -1.64
SCFD1-210ENST00000553693 NKX1-2Q9UD57 310 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-210ENST00000553693 A6NNZ2 444 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 A8MVJ9 347 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 EXOC5O00471 708 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 SOCS2O14508 198 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 FCHO1O14526 889 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 SNX2O60749 519 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 MAP4K4O95819 1239 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-210ENST00000553693 FGBP02675 491 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 MYF5P13349 255 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 IL1R1P14778 569 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 FMO1Q01740 532 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 STK3Q13188 491 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 MAFAQ8NHW3 353 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-210ENST00000553693 PNISRQ8TF01 805 aaKnown RBP4.81□□□□□ -1.64
SCFD1-210ENST00000553693 ZBTB9Q96C00 473 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 CTHRC1Q96CG8 243 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 WDYHV1Q96HA8 205 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 ZBTB45Q96K62 511 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-210ENST00000553693 COL20A1Q9P218 1284 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 LPAR3Q9UBY5 353 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 STEAP1Q9UHE8 339 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 MID2Q9UJV3 735 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 ABCC9O60706 1549 aa4.81□□□□□ -1.64
SCFD1-210ENST00000553693 H3BNC9 293 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 TPP1O14773 563 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 TSPAN6O43657 245 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 PARP1P09874 1014 aaKnown RBP4.8□□□□□ -1.64
SCFD1-210ENST00000553693 RPL17P18621 184 aaKnown RBP4.8□□□□□ -1.64
SCFD1-210ENST00000553693 PEX2P28328 305 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 RBL1P28749 1068 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 CFHR3Q02985 330 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 KIAA0753Q2KHM9 967 aa4.8□□□□□ -1.64
SCFD1-210ENST00000553693 CC2D1BQ5T0F9 858 aaKnown RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms