RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 WDR24Q96S15 920 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 NAP1L3Q99457 506 aaPredicted RBP8.87□□□□□ -0.99
CHD4-208ENST00000540960 AGPAT1Q99943 283 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 KIFC3Q9BVG8 833 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 PLEKHA4Q9H4M7 779 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 RPF1Q9H9Y2 349 aaKnown RBP8.87□□□□□ -0.99
CHD4-208ENST00000540960 RXFP1Q9HBX9 757 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 HCFC1R1Q9NWW0 138 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 DERAQ9Y315 318 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 REXO2Q9Y3B8 237 aaKnown RBP8.87□□□□□ -0.99
CHD4-208ENST00000540960 HYOU1Q9Y4L1 999 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 PI4KAP42356 2102 aa8.87□□□□□ -0.99
CHD4-208ENST00000540960 C2CD3Q4AC94 2353 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 CNTNAP2Q9UHC6 1331 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 A0A087X0T9 212 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 A0A0U1RQF3 1178 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 MACROD2A1Z1Q3 448 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 RTN2O75298 545 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 ADRB2P07550 413 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 TMEM191BP0C7N4 346 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 FAM228BP0C875 321 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 RPL17P18621 184 aaKnown RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 FGFR4P22455 802 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 PROZP22891 400 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 NOP2P46087 812 aaKnown RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 AFF1P51825 1210 aaKnown RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 CRYBB1P53674 252 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 HADHBP55084 474 aaKnown RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 ARHGAP44Q17R89 818 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 CFAP221Q4G0U5 840 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 SLC39A4Q6P5W5 647 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 TAS1R3Q7RTX0 852 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 TRAPPC11Q7Z392 1133 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 ZNF571Q7Z3V5 609 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 MSANTD4Q8NCY6 345 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 LSM14AQ8ND56 463 aaKnown RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 HDAC7Q8WUI4 952 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 NLRP7Q8WX94 980 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 VCPIP1Q96JH7 1222 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 ZNF668Q96K58 619 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 PBKQ96KB5 322 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 DCBLD2Q96PD2 775 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 CCDC94Q9BW85 323 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 SEMA4CQ9C0C4 833 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 MIS12Q9H081 205 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 PDCL3Q9H2J4 239 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 BRD9Q9H8M2 597 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 ZNF334Q9HCZ1 680 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 TOPORSQ9NS56 1045 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 DPP7Q9UHL4 492 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 CPSF3Q9UKF6 684 aaKnown RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 INPP5FQ9Y2H2 1132 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 CEP83Q9Y592 693 aa8.86□□□□□ -0.99
CHD4-208ENST00000540960 MUC22E2RYF6 1773 aaPredicted RBP8.86□□□□□ -0.99
CHD4-208ENST00000540960 GOLGA4Q13439 2230 aaKnown RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 TSC2P49815 1807 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 GRID2IPA4D2P6 1211 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 MIF4GDA9UHW6 222 aaKnown RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 F8W810 466 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 FOXN3O00409 490 aaPredicted RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 CCL16O15467 120 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 MED7O43513 233 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 ATP8B1O43520 1251 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 HLA-DRAP01903 254 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 C4BPAP04003 597 aaKnown RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 VTNP04004 478 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 SOD2P04179 222 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 URODP06132 367 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 KRT10P13645 584 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 ZSCAN20P17040 1043 aaPredicted RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 PAX3P23760 479 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 FCARP24071 287 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 USP8P40818 1118 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 ABCG1P45844 678 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 MAPK8P45983 427 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 CCR10P46092 362 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 SOX9P48436 509 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 YARSP54577 528 aaKnown RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 SNX16P57768 344 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 DLG4P78352 724 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 CDR2Q01850 454 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 MBTD1Q05BQ5 628 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 SEMA3BQ13214 749 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 NCOA4Q13772 614 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 RPS6KA1Q15418 735 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 MAP9Q49MG5 647 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 GLE1Q53GS7 698 aaKnown RBP8.85□□□□□ -0.99
CHD4-208ENST00000540960 C1orf220Q5T0J3 134 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 LIN9Q5TKA1 542 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 ELMSAN1Q6PJG2 1045 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 SCUBE3Q8IX30 993 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 LRRC71Q8N4P6 559 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 LINC01465Q8N7H1 131 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 SLC30A5Q8TAD4 765 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 RFFLQ8WZ73 363 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 PKNOX2Q96KN3 472 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 ZNF518BQ9C0D4 1074 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 CYP3A43Q9HB55 503 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 PTPRHQ9HD43 1115 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 CHST12Q9NRB3 414 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms