RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GOLGA8DPQ0D2H9 430 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 ADIGQ0VDE8 80 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 ZNF268Q14587 947 aaPredicted RBP18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 GSE1Q14687 1217 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 HECTD3Q5T447 861 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 GAREM2Q75VX8 874 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 DDX42Q86XP3 938 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 ADHFE1Q8IWW8 467 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 ZDHHC14Q8IZN3 488 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 SCAMP5Q8TAC9 235 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 DEF6Q9H4E7 631 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 LUC7LQ9NQ29 371 aaKnown RBP18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 HCFC1R1Q9NWW0 138 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 OBP2AQ9NY56 170 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 RRN3Q9NYV6 651 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 EPS15L1Q9UBC2 864 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 PATJQ8NI35 1801 aa18.39■□□□□ 0.54
CLSTN3-210ENST00000540931 TRAV19A0A0A6YYK7 116 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 PRR33A8MZF0 331 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 MYBL1P10243 752 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 UNGP13051 313 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 DESP17661 470 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 KPNA1P52294 538 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 C1QBPQ07021 282 aaKnown RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 IFRD2Q12894 506 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 MAPK8IP2Q13387 824 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 MTMR3Q13615 1198 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 PTPN21Q16825 1174 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 CLEC16AQ2KHT3 1053 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 BTBD8Q5XKL5 378 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 GET4Q7L5D6 327 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 ARCQ7LC44 396 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 PHF13Q86YI8 300 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 HS6ST3Q8IZP7 471 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 SHKBP1Q8TBC3 707 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 FGF13Q92913 245 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 CCDC42Q96M95 316 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 NACA2Q9H009 215 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 TRPV4Q9HBA0 871 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 ZNF334Q9HCZ1 680 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 IGSF9Q9P2J2 1179 aa18.39■□□□□ 0.53
CLSTN3-210ENST00000540931 LAMP2P13473 410 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 LCP1P13796 627 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 IL9P15248 144 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 MMP8P22894 467 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 ATP5C1P36542 298 aaKnown RBP18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 CDR1P51861 262 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 GSCP56915 257 aaPredicted RBP18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 DAOAP59103 153 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 YWHAGP61981 247 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 USP46P62068 366 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 MTA1Q13330 715 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 C10orf76Q5T2E6 689 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 GPR158Q5T848 1215 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 ACAD10Q6JQN1 1059 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 PASD1Q8IV76 773 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 NPAS3Q8IXF0 933 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 CCDC170Q8IYT3 715 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 CMTM8Q8IZV2 173 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 WDTC1Q8N5D0 677 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 RNF139Q8WU17 664 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 SLC20A1Q8WUM9 679 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 ULBP1Q9BZM6 244 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 NAGPAQ9UK23 515 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 GREB1Q4ZG55 1949 aa18.38■□□□□ 0.53
CLSTN3-210ENST00000540931 ANKRD62A6NC57 917 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 E5RJQ4 531 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 DPYSL4O14531 572 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 HSF2BPO75031 334 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 RTN2O75298 545 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 IPO7O95373 1038 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 ABL1P00519 1130 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 TCF3P15923 654 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 CHRNB2P17787 502 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 HDCP19113 662 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 RGS7P49802 495 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 ADKP55263 362 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 YWHAZP63104 245 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 TEAD2Q15562 447 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 NAA35Q5VZE5 725 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 HGSNATQ68CP4 663 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 GPRIN1Q7Z2K8 1008 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 TMTC1Q8IUR5 882 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 TXLNBQ8N3L3 684 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 SMARCD2Q92925 531 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 CPXM1Q96SM3 734 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 SYT11Q9BT88 431 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 POPDC2Q9HBU9 364 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 ZFP14Q9HCL3 533 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 ADAM22Q9P0K1 906 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 CHORDC1Q9UHD1 332 aaPredicted RBP18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 C2orf16Q68DN1 1984 aa18.37■□□□□ 0.53
CLSTN3-210ENST00000540931 TULP2O00295 520 aa18.36■□□□□ 0.53
CLSTN3-210ENST00000540931 CAPN9O14815 690 aa18.36■□□□□ 0.53
CLSTN3-210ENST00000540931 AKR1B10O60218 316 aa18.36■□□□□ 0.53
CLSTN3-210ENST00000540931 TLR5O60602 858 aa18.36■□□□□ 0.53
CLSTN3-210ENST00000540931 LTFP02788 710 aa18.36■□□□□ 0.53
CLSTN3-210ENST00000540931 NTHL1P78549 312 aa18.36■□□□□ 0.53
CLSTN3-210ENST00000540931 SLC7A9P82251 487 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms