RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MYLK2Q9H1R3 596 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ASNSD1Q9NWL6 643 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 RARBP10826 455 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ABCG1P45844 678 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 PGGT1BP53609 377 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 SLC10A2Q12908 348 aaPredicted RBP17.63■□□□□ 0.41
USP28-208ENST00000540438 NME3Q13232 169 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 LAMC2Q13753 1193 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 SPARCL1Q14515 664 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 CASC4Q6P4E1 433 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 RFX8Q6ZV50 586 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 VSIG1Q86XK7 387 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 SLC2A14Q8TDB8 520 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ATXN7L3BQ96GX2 97 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 LGMNQ99538 433 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ACSS2Q9NR19 701 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 FARP1Q9Y4F1 1045 aaPredicted RBP17.63■□□□□ 0.41
USP28-208ENST00000540438 I3L4J1 428 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 CYB561D2O14569 222 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 TREHO43280 583 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 IL18RAPO95256 599 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 CTSHP09668 335 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 PYGBP11216 843 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 CDH5P33151 784 aaPredicted RBP17.62■□□□□ 0.41
USP28-208ENST00000540438 SOX4Q06945 474 aaPredicted RBP17.62■□□□□ 0.41
USP28-208ENST00000540438 DPY19L2Q6NUT2 758 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 TRMT10BQ6PF06 316 aaKnown RBP17.62■□□□□ 0.41
USP28-208ENST00000540438 FASTKD5Q7L8L6 764 aaKnown RBP17.62■□□□□ 0.41
USP28-208ENST00000540438 ARMC9Q7Z3E5 817 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 PLD5Q8N7P1 536 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 LRRC8CQ8TDW0 803 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 MROH8Q9H579 483 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 KLHL14Q9P2G3 628 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 KCNH4Q9UQ05 1017 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 TCRBV9S1A1TA0A576 114 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 ASB14A6NK59 587 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 BEST1O76090 585 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 METTL18O95568 372 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 ASMTLO95671 621 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 VDRP11473 427 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 SDC4P31431 198 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 ZNF143P52747 638 aaPredicted RBP17.62■□□□□ 0.41
USP28-208ENST00000540438 IFRD2Q12894 506 aaPredicted RBP17.62■□□□□ 0.41
USP28-208ENST00000540438 DEPDC1BQ8WUY9 529 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 MCRS1Q96EZ8 462 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 ETNK1Q9HBU6 452 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 EURLQ9NYK6 297 aa17.62■□□□□ 0.41
USP28-208ENST00000540438 CREB3O43889 395 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 ZBED1O96006 694 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 MCF2P10911 925 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 CYP2B6P20813 491 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 GEMIN4P57678 1058 aaKnown RBP17.61■□□□□ 0.41
USP28-208ENST00000540438 ZNF268Q14587 947 aaPredicted RBP17.61■□□□□ 0.41
USP28-208ENST00000540438 PLEKHG4Q58EX7 1191 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 LRRC38Q5VT99 294 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 CDHR3Q6ZTQ4 885 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 GPR142Q7Z601 462 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 PQLC3Q8N755 202 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 RFWD2Q8NHY2 731 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 LHX5Q9H2C1 402 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 KDM4CQ9H3R0 1056 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 TRIP12Q14669 1992 aaPredicted RBP17.61■□□□□ 0.41
USP28-208ENST00000540438 WDR90Q96KV7 1748 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 A0A1B0GUA9 196 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 APOC4-APOC2K7ER74 178 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 USP12O75317 370 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 APOC2P02655 101 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 CYP2C9P11712 490 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 CMASQ8NFW8 434 aaPredicted RBP17.61■□□□□ 0.41
USP28-208ENST00000540438 KHSRPQ92945 711 aaKnown RBP eCLIP17.61■□□□□ 0.41
USP28-208ENST00000540438 SGSM3Q96HU1 749 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 DRG1Q9Y295 367 aaKnown RBP17.61■□□□□ 0.41
USP28-208ENST00000540438 GOT1P17174 413 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 HDAC4P56524 1084 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 PTK7Q13308 1070 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 PPP2R5DQ14738 602 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 SNCBQ16143 134 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 ZNF792Q3KQV3 632 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 MROH9Q5TGP6 573 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 DENND5BQ6ZUT9 1274 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 HASPINQ8TF76 798 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 MAGEB18Q96M61 343 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 AGAP3Q96P47 875 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 PTPN18Q99952 460 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 CNPY3Q9BT09 278 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 RHOBTB2Q9BYZ6 727 aa17.61■□□□□ 0.41
USP28-208ENST00000540438 PSMC3IPQ9P2W1 217 aaPredicted RBP17.61■□□□□ 0.41
USP28-208ENST00000540438 MMP3P08254 477 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 ZNF484Q5JVG2 852 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 OTOAQ7RTW8 1153 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 ARRDC4Q8NCT1 418 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 LPPQ93052 612 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 RNF157Q96PX1 679 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 HESX1Q9UBX0 185 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 ARL2BPQ9Y2Y0 163 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 SNX10Q9Y5X0 201 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 IKBKGQ9Y6K9 419 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 H0Y3Z8 333 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 BGNP21810 368 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 TKTP29401 623 aaKnown RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms