RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 OR6B3Q8NGW1 331 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 FBF1Q8TES7 1133 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 SYT17Q9BSW7 474 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 KLC2Q9H0B6 622 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 PCDH18Q9HCL0 1135 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 MLXIPLQ9NP71 852 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 PNPLA8Q9NP80 782 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 GDAP2Q9NXN4 497 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.48■□□□□ 0.07
NUP54-217ENST00000514987 IKBKGQ9Y6K9 419 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 IQANK1A0A1B0GTG1 560 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 A8MXQ7 604 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 FOXO6A8MYZ6 492 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 TMEM63AO94886 807 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 KCNE1P15382 129 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 MAGEA6P43360 314 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 NR2C2P49116 596 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 SEPT7Q16181 437 aaKnown RBP15.47■□□□□ 0.07
NUP54-217ENST00000514987 CDO1Q16878 200 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 GALNTL6Q49A17 601 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 MSS51Q4VC12 460 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 FBXO47Q5MNV8 452 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 SH3PXD2AQ5TCZ1 1133 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 CHADLQ6NUI6 762 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 CYB5D1Q6P9G0 228 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 CCDC63Q8NA47 563 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 LRRC8CQ8TDW0 803 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 APBB2Q92870 758 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 LRRC39Q96DD0 335 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 HSFY1Q96LI6 401 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 ZMAT2Q96NC0 199 aaKnown RBP15.47■□□□□ 0.07
NUP54-217ENST00000514987 PAFAH2Q99487 392 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 PAIP2Q9BPZ3 127 aaKnown RBP15.47■□□□□ 0.07
NUP54-217ENST00000514987 FAM49AQ9H0Q0 323 aaPredicted RBP15.47■□□□□ 0.07
NUP54-217ENST00000514987 SNX25Q9H3E2 840 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 USP29Q9HBJ7 922 aa15.47■□□□□ 0.07
NUP54-217ENST00000514987 PDCD11Q14690 1871 aaKnown RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 DCAF8L1A6NGE4 600 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 PIRO00625 290 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 PAPSS1O43252 624 aaPredicted RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 ATP2C2O75185 946 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SPAG7O75391 227 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 ZNF189O75820 626 aaPredicted RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 ZBED1O96006 694 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 CYP2C9P11712 490 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 ALDH3A1P30838 453 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SSTR1P30872 391 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 FOXN2P32314 431 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SKIV2L2P42285 1042 aaKnown RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 PSMC4P43686 418 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 ATP11AP98196 1134 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 PDE4CQ08493 712 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SOWAHAQ2M3V2 549 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SPRED3Q2MJR0 410 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SV2CQ496J9 727 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 C1orf228Q6PIY5 440 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 CAPN12Q6ZSI9 719 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 ZC3H18Q86VM9 953 aaKnown RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 MCUQ8NE86 351 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 CENPIQ92674 756 aaPredicted RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 KHSRPQ92945 711 aaKnown RBP eCLIP15.46■□□□□ 0.074e-7■■■■□ 23.6
NUP54-217ENST00000514987 TNIP3Q96KP6 325 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 SNRNP25Q9BV90 132 aaKnown RBP15.46■□□□□ 0.07
NUP54-217ENST00000514987 C10orf88Q9H8K7 445 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 ABCF3Q9NUQ8 709 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 FAM49BQ9NUQ9 324 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 TUBGCP4Q9UGJ1 667 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 CLEC11AQ9Y240 323 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 TEX264Q9Y6I9 313 aa15.46■□□□□ 0.07
NUP54-217ENST00000514987 TRDMT1O14717 391 aaKnown RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 KCNN4O15554 427 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 DYNC1LI2O43237 492 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 GRAP2O75791 330 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 ATP5HO75947 161 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 RECQL4O94761 1208 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 IL4RP24394 825 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 RPA3P35244 121 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 GNL1P36915 607 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 ZNF200P98182 395 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 BNIP1Q12981 228 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 ZKSCAN8Q15776 578 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 DPYSL2Q16555 572 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 XKR4Q5GH76 650 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 EFHC1Q5JVL4 640 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 ICE2Q659A1 982 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 NPNTQ6UXI9 565 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 PSTKQ8IV42 348 aaKnown RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 SCUBE3Q8IX30 993 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 PARP9Q8IXQ6 854 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 PQLC3Q8N755 202 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 MAGEC3Q8TD91 643 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 DCAKDQ8WVC6 231 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 UPF1Q92900 1129 aaKnown RBP eCLIP15.45■□□□□ 0.06
NUP54-217ENST00000514987 PIWIL1Q96J94 861 aaKnown RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 EIF2AQ9BY44 585 aaKnown RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 ZNF408Q9H9D4 720 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 GTF2IRD1Q9UHL9 959 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 TCRBV7S3A2A0A539 114 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 KPNA7A9QM74 516 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 PIK3R2O00459 728 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms