RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ZIM3Q96PE6 472 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 RNF157Q96PX1 679 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 PEBP4Q96S96 227 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 SLC9A7Q96T83 725 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 NPY6RQ99463 290 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 PAAF1Q9BRP4 392 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 ZNF670Q9BS34 389 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 UNC93B1Q9H1C4 597 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 ZWILCHQ9H900 591 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 LRRC4Q9HBW1 653 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 CNGB3Q9NQW8 809 aa8.75□□□□□ -1.01
RNF4-220ENST00000513578 RCOR3Q9P2K3 495 aaPredicted RBP8.75□□□□□ -1.01
RNF4-220ENST00000513578 TET1Q8NFU7 2136 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 MYBPHLA2RUH7 354 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 HHLA1C9JL84 531 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 H0YGN5 161 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 SMAPO00193 183 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 SYN3O14994 580 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TP73O15350 636 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 HOXA2O43364 376 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 CST8O60676 142 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 NBNO60934 754 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 BEST1O76090 585 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 B3GAT3O94766 335 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 OAZ2O95190 189 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 KRT14P02533 472 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 NUDT17P0C025 328 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 RARGP13631 454 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 LCP1P13796 627 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 ATF2P15336 505 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 CAPN2P17655 700 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TGM2P21980 687 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 IL4RP24394 825 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 ACAT1P24752 427 aaKnown RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 GJC1P36383 396 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PLTPP55058 493 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 EIF3BP55884 814 aaKnown RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 DAOAP59103 153 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 YWHAZP63104 245 aaKnown RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 DHX9Q08211 1270 aaKnown RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 SNX1Q13596 522 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 DPYSL3Q14195 570 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TAF5Q15542 800 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 UAP1Q16222 522 aaPredicted RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 DPYSL2Q16555 572 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 C15orf59Q2T9L4 293 aaPredicted RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 ZFYVE27Q5T4F4 411 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 ERMARDQ5T6L9 678 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 EMC10Q5UCC4 262 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 SLC9A4Q6AI14 798 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PM20D1Q6GTS8 502 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 OVOS1Q6IE37 1185 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 ZNF365Q70YC5 407 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TRMT10CQ7L0Y3 403 aaKnown RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 ZMIZ2Q8NF64 920 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 FBXO25Q8TCJ0 367 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PGAP3Q96FM1 320 aaPredicted RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 CFAP57Q96MR6 1250 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 GDAP1L1Q96MZ0 367 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 SMOQ99835 787 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 MED10Q9BTT4 135 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TMEM109Q9BVC6 243 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TRIM62Q9BVG3 475 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PHACTR1Q9C0D0 580 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 CRISPLD2Q9H0B8 497 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PABPC3Q9H361 631 aaKnown RBP8.74□□□□□ -1.01
RNF4-220ENST00000513578 PLEKHA4Q9H4M7 779 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PCDH9Q9HC56 1237 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PCDH18Q9HCL0 1135 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 KRT82Q9NSB4 513 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 TBC1D13Q9NVG8 400 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 KLHL11Q9NVR0 708 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PSD3Q9NYI0 1048 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 PCSK1NQ9UHG2 260 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 DNPEPQ9ULA0 475 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 STAP1Q9ULZ2 295 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 NFS1Q9Y697 457 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 LTBP2Q14767 1821 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 GREB1Q4ZG55 1949 aa8.74□□□□□ -1.01
RNF4-220ENST00000513578 ZNF638Q14966 1978 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 CFAP69A5D8W1 941 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 PIK3R2O00459 728 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 CLDN5O00501 218 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 DNALI1O14645 258 aaPredicted RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 TRAPPC3O43617 180 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 ZNF189O75820 626 aaPredicted RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 AP1G2O75843 785 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 DDHD2O94830 711 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 CD48P09326 243 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 CCL5P13501 91 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 ZFXP17010 805 aaPredicted RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 STIP1P31948 543 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 BRCC3P46736 316 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 TKTL1P51854 596 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 ZNF135P52742 658 aaPredicted RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 PMS2P54278 862 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 CDH6P55285 790 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 TSPY1Q01534 308 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 OTUD4Q01804 1114 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 ADIGQ0VDE8 80 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms