RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	ARHGAP17	Q68EM7	881 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	C1orf228	Q6PIY5	440 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	TMEM270	Q6UE05	265 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	SCD5	Q86SK9	330 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	TTC39C	Q8N584	583 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	UBA3	Q8TBC4	463 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	TFAP2B	Q92481	460 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	NDRG1	Q92597	394 aa	Known RBP	14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	CNOT6L	Q96LI5	555 aa	Known RBP	14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	P2RY13	Q9BPV8	354 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	DNAI2	Q9GZS0	605 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	INTS2	Q9H0H0	1204 aa	Known RBP	14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	NUP62CL	Q9H1M0	184 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	TSPAN16	Q9UKR8	245 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	PCDHB4	Q9Y5E5	795 aa		14.01	□□□□□ -0.17
RNF4-215	ENST00000511843	PMM2	O15305	246 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	RNF40	O75150	1001 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	GNA14	O95837	355 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	TBXAS1	P24557	533 aa	Predicted RBP	14	□□□□□ -0.17
RNF4-215	ENST00000511843	CXCL12	P48061	93 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	TUB	P50607	506 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	CCR3	P51677	355 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	APBA1	Q02410	837 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	PDE4C	Q08493	712 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	MESP2	Q0VG99	397 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	GRSF1	Q12849	480 aa	Known RBP eCLIP	14	□□□□□ -0.17
RNF4-215	ENST00000511843	DHCR24	Q15392	516 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	ZNF528	Q3MIS6	628 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	SGO2	Q562F6	1265 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	HSP90AA4P	Q58FG1	418 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	HEATR6	Q6AI08	1181 aa	Known RBP	14	□□□□□ -0.17
RNF4-215	ENST00000511843	CLEC17A	Q6ZS10	378 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	PIGZ	Q86VD9	579 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	C12orf40	Q86WS4	652 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	IRF2BP1	Q8IU81	584 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	SFTPA1	Q8IWL2	248 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	BBS7	Q8IWZ6	715 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	SPEM1	Q8N4L4	309 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	ZSWIM1	Q9BR11	485 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	CRACR2A	Q9BSW2	395 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	PNPLA8	Q9NP80	782 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	NAGPA	Q9UK23	515 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	SH3BP1	Q9Y3L3	701 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	DMD	P11532	3685 aa		14	□□□□□ -0.17
RNF4-215	ENST00000511843	MYO18A	Q92614	2054 aa	Known RBP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843		O00370	1275 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	CCDC192	P0DO97	292 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	RARG	P13631	454 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	BRD2	P25440	801 aa	Known RBP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	OPRD1	P41143	372 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	SLC6A11	P48066	632 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	YWHAE	P62258	255 aa	Known RBP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	GJB7	Q6PEY0	223 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	RHBDF2	Q6PJF5	856 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	CCDC186	Q7Z3E2	898 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	DDX42	Q86XP3	938 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	ADGRG2	Q8IZP9	1017 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	ANKRD52	Q8NB46	1076 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	EHBP1	Q8NDI1	1231 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	CD101	Q93033	1021 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	KREMEN1	Q96MU8	473 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	KLF16	Q9BXK1	252 aa	Predicted RBP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	CYLD	Q9NQC7	956 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	ZSCAN32	Q9NX65	697 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	USP3	Q9Y6I4	520 aa		13.99	□□□□□ -0.17
RNF4-215	ENST00000511843	RALGAPA1	Q6GYQ0	2036 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	E2F8	A0AVK6	867 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	CHURC1-FNTB	B4DL54	471 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843		K7ESF4	209 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	PIK3R2	O00459	728 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	P4HA2	O15460	535 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	VDR	P11473	427 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	ATP5C1	P36542	298 aa	Known RBP	13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	PXN	P49023	591 aa	Predicted RBP	13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	FNTB	P49356	437 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	RGS7	P49802	495 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	TKTL1	P51854	596 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	BCAT1	P54687	386 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	SEC13	P55735	322 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	KDSR	Q06136	332 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	CETN1	Q12798	172 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	NR1H3	Q13133	447 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	SRSF5	Q13243	272 aa	Known RBP	13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	C10orf120	Q5SQS8	335 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	LY6G5C	Q5SRR4	150 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	ZC3H14	Q6PJT7	736 aa	Known RBP	13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	MIB1	Q86YT6	1006 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	MLKL	Q8NB16	471 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	ZBTB44	Q8NCP5	570 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	GPT2	Q8TD30	523 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	ATRIP	Q8WXE1	791 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	NELL1	Q92832	810 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	IER2	Q9BTL4	223 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	ULBP1	Q9BZM6	244 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	FAM124B	Q9H5Z6	455 aa	Predicted RBP	13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	HESX1	Q9UBX0	185 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	PCDHGA2	Q9Y5H1	932 aa		13.98	□□□□□ -0.17
RNF4-215	ENST00000511843	SLC9A3R1	O14745	358 aa	Predicted RBP	13.97	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms