RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.06■□□□□ 0.642e-8■■■■■ 31.1
SQSTM1-209ENST00000504627 TMEM30AQ9NV96 361 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 GMEB2Q9UKD1 530 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 GPR179Q6PRD1 2367 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 LEFTY2O00292 366 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 AP1G2O75843 785 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 NFATC1O95644 943 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 ASS1P00966 412 aaKnown RBP19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 TRIM49P0CI25 452 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 TRIM49CP0CI26 452 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 TCF3P15923 654 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 DRD1P21728 446 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 GCLMP48507 274 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 NR1I3Q14994 352 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 LPAL2Q16609 132 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 VWA3BQ502W6 1294 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 MIIPQ5JXC2 388 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 SPOPLQ6IQ16 392 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 LONP2Q86WA8 852 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 PDZD8Q8NEN9 1154 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 CHFRQ96EP1 664 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 SMARCD1Q96GM5 515 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 RNF38Q9H0F5 515 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 VPS16Q9H269 839 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 LINC00597Q9H2U6 94 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 SMPD4Q9NXE4 827 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 CPQQ9Y646 472 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 PTPRDP23468 1912 aa19.05■□□□□ 0.64
SQSTM1-209ENST00000504627 GREB1Q4ZG55 1949 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 K7ESF4 209 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 RNF40O75150 1001 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 EGFP01133 1207 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 MBL2P11226 248 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 DEKP35659 375 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 SLC7A9P82251 487 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 DMWDQ09019 674 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 ORC1Q13415 861 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 C1orf220Q5T0J3 134 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 UNC93AQ86WB7 457 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 VSTM4Q8IW00 320 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 GPR161Q8N6U8 529 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 CCDC150Q8NCX0 1101 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 OVCA2Q8WZ82 227 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 CD101Q93033 1021 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 NDST4Q9H3R1 872 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 KRT82Q9NSB4 513 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 C2orf42Q9NWW7 574 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 CHORDC1Q9UHD1 332 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 SLC8A2Q9UPR5 921 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 ANAPC1Q9H1A4 1944 aa19.04■□□□□ 0.64
SQSTM1-209ENST00000504627 ITIH6Q6UXX5 1313 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 A0A1W2PQC6 194 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 OAS1P00973 400 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 CCDC130P13994 396 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 CNR2P34972 360 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 ASPAP45381 313 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 SLC5A3P53794 718 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 MCCD1P59942 119 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 ZXDBP98169 803 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 SIM2Q14190 667 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 FBXO43Q4G163 708 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 FKBP15Q5T1M5 1219 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 PAQR9Q6ZVX9 377 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 FUKQ8N0W3 1084 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 CRYBG2Q8N1P7 616 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 SCAMP5Q8TAC9 235 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 SLC2A14Q8TDB8 520 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 TAS1R2Q8TE23 839 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 FBRSL1Q9HCM7 1045 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 FAM49BQ9NUQ9 324 aa19.03■□□□□ 0.64
SQSTM1-209ENST00000504627 GOLGA6L6A8MZA4 724 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 PES1O00541 588 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 SLC9A3R1O14745 358 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 PBX1P40424 430 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 UBXN1Q04323 297 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 PPP3CAQ08209 521 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 DCAF17Q5H9S7 520 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 HECTD3Q5T447 861 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 NAIF1Q69YI7 327 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 LAIR1Q6GTX8 287 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 PKN3Q6P5Z2 889 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 CEP68Q76N32 757 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 DDX42Q86XP3 938 aaKnown RBP eCLIP19.02■□□□□ 0.642e-11■□□□□ 10.2
SQSTM1-209ENST00000504627 SLC35C1Q96A29 364 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 DNAI2Q9GZS0 605 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 TMEM8AQ9HCN3 771 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 COMMD8Q9NX08 183 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 CFAP97Q9P2B7 532 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 HMGXB4Q9UGU5 601 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 USP18Q9UMW8 372 aa19.02■□□□□ 0.64
SQSTM1-209ENST00000504627 TNFRSF10BO14763 440 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 TEX33O43247 280 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 HRO43593 1189 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 OLFM2O95897 454 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 AFPP02771 609 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 FAM200BP0CF97 657 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 CD58P19256 250 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 ADORA2BP29275 332 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 HOXA6P31267 233 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms