RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 DYNLL1P63167 89 aaKnown RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 TFAP4Q01664 338 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 DUSP6Q16828 381 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 TMEM63BQ5T3F8 832 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CASC4Q6P4E1 433 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CDH24Q86UP0 819 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 C10orf53Q8N6V4 93 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 AUTS2Q8WXX7 1259 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CHMP6Q96FZ7 201 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ANKRD27Q96NW4 1050 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PARD6BQ9BYG5 372 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 HEBP1Q9NRV9 189 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 QPCTLQ9NXS2 382 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 WARS2Q9UGM6 360 aaKnown RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 CDH7Q9ULB5 785 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PCDHGA1Q9Y5H4 931 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 NUMBLQ9Y6R0 609 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 TRPM7Q96QT4 1865 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PHLPP2Q6ZVD8 1323 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 BLACEA4D250 179 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 E7EVH7 732 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 KLHL18O94889 574 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 RASGRP1O95267 797 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 CKMP06732 381 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 KRT16P08779 473 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ZNF865P0CJ78 1059 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 HOXB3P14651 431 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 FGFR2P21802 821 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 HSPA9P38646 679 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 ARL1P40616 181 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 ZNF569Q5MCW4 686 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 IRGCQ6NXR0 463 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 BORAQ6PGQ7 559 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 KDM7AQ6ZMT4 941 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 GRASPQ7Z6J2 395 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 SLC44A3Q8N4M1 653 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 CPA6Q8N4T0 437 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 FAM133AQ8N9E0 248 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 SCAIQ8N9R8 606 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ARL5BQ96KC2 179 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 FOXP3Q9BZS1 431 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 GPR88Q9GZN0 384 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 C6orf50Q9HD87 102 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 CASS4Q9NQ75 786 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 IFNKQ9P0W0 207 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 NCKAP1Q9Y2A7 1128 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 IGF2RP11717 2491 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 EPOPA6NHQ4 379 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 INO80B-WBP1J3KQ70 363 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 HNRNPRO43390 633 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 BUB1O43683 1085 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 GNAI2P04899 355 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 CSF1RP07333 972 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 CDC25BP30305 580 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MRPS6P82932 125 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 PURAQ00577 322 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 DNM1Q05193 864 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 EXOSC9Q06265 439 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 CSTF3Q12996 717 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 COASYQ13057 564 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 RESTQ13127 1097 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 RCN2Q14257 317 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 TRIM25Q14258 630 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 AGERQ15109 404 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ZMYND11Q15326 602 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 KDELC1Q6UW63 502 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 RSPO2Q6UXX9 243 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 C15orf52Q6ZUT6 534 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 ANO5Q75V66 913 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 KRT77Q7Z794 578 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 SIRT2Q8IXJ6 389 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 FOXJ1Q92949 421 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 FAM163AQ96GL9 167 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 CCDC42Q96M95 316 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 VPS16Q9H269 839 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 TMEM245Q9H330 911 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MMRN2Q9H8L6 949 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ABCF3Q9NUQ8 709 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 DNAAF2Q9NVR5 837 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 ATXN10Q9UBB4 475 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 PTPRCP08575 1304 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ARHGAP10A1A4S6 786 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MEN1O00255 615 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 RTCAO00442 366 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 NDUFB5O43674 189 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ALOX5P09917 674 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 C6P13671 934 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 PTPN2P17706 415 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 GJB2P29033 226 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ITKQ08881 620 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 USP41Q3LFD5 358 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 IL27RAQ6UWB1 636 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 RFX8Q6ZV50 586 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 TRMT11Q7Z4G4 463 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 LUZP2Q86TE4 346 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 PM20D2Q8IYS1 436 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 STK32AQ8WU08 396 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 PRCCQ92733 491 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 COPS5Q92905 334 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 VPS39Q96JC1 886 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms