RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 TTC31Q49AM3 519 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 CEP55Q53EZ4 464 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 EARS2Q5JPH6 523 aaKnown RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 FGD2Q7Z6J4 655 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 CCDC12Q8WUD4 166 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 CDHR1Q96JP9 859 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 MAGEB10Q96LZ2 347 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 KATNAL1Q9BW62 490 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 C1QTNF3Q9BXJ4 246 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 AGO4Q9HCK5 861 aaKnown RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 CDC42EP3Q9UKI2 254 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 KCNJ14Q9UNX9 436 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 KAT6AQ92794 2004 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 MYH9P35579 1960 aaKnown RBP5.43□□□□□ -1.54
CSMD3-208ENST00000497026 MICAL3Q7RTP6 2002 aa5.43□□□□□ -1.54
CSMD3-208ENST00000497026 LOXHD1Q8IVV2 1947 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 FOXS1O43638 330 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 ZNF623O75123 536 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 CDKL5O76039 1030 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 TDP2O95551 362 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 IVLP07476 585 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SUPT20HL2P0C7V6 817 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SMIM10L2AP0DMW4 78 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SMIM10L2BP0DMW5 78 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 NAT1P18440 290 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 AOAHP28039 575 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 USP8P40818 1118 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 KCNQ1P51787 676 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 NLRP5P59047 1200 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 PPIGQ13427 754 aaKnown RBP eCLIP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 LONRF2Q1L5Z9 754 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 TMEM240Q5SV17 173 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 FAM109BQ6ICB4 259 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 ABHD17CQ6PCB6 329 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 CPLX2Q6PUV4 134 aaKnown RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 ZNF365Q70YC5 407 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 NIPA1Q7RTP0 329 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 BRAPQ7Z569 592 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 TAX1BP1Q86VP1 789 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 PLA2G4DQ86XP0 818 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 BLIDQ8IZY5 108 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 FAM177A1Q8N128 213 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 LILRB2Q8N423 598 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 TMEM199Q8N511 208 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 C7orf31Q8N865 590 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 GIMAP8Q8ND71 665 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 TBCKQ8TEA7 893 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 LMBR1Q8WVP7 490 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SEPT1Q8WYJ6 367 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 UIMC1Q96RL1 719 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 RNPEPQ9H4A4 650 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 TTC12Q9H892 705 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 ORC3Q9UBD5 711 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SLC9A2Q9UBY0 812 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SFMBT1Q9UHJ3 866 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 SLC4A7Q9Y6M7 1214 aa5.42□□□□□ -1.54
CSMD3-208ENST00000497026 IGKV6D-21A0A0A0MT36 114 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 DDX39AO00148 427 aaKnown RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 IPO5O00410 1097 aaKnown RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 SLC37A4O43826 429 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 NEMFO60524 1076 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 CLASP2O75122 1294 aaKnown RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 IQCF3P0C7M6 154 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 CKBP12277 381 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 TNNT1P13805 278 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 MARK3P27448 753 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 GJA4P35212 333 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 HNRNPH2P55795 449 aaKnown RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 ACTR2P61160 394 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 ZXDAP98168 799 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 SETQ01105 290 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 TOP3AQ13472 1001 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 RNF151Q2KHN1 245 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 TCTN1Q2MV58 587 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 PRR16Q569H4 304 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 MARCH8Q5T0T0 291 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 TCTN3Q6NUS6 607 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 B3GNT9Q6UX72 402 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 LARP4Q71RC2 724 aaKnown RBP eCLIP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 SERINC5Q86VE9 423 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 CCDC60Q8IWA6 550 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 CCDC83Q8IWF9 413 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 REXO1L1PQ8IX06 675 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 GSTCDQ8NEC7 633 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 CAGE1Q8TC20 777 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 Q8TCH9 128 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 BICD2Q8TD16 824 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 AFAP1L1Q8TED9 768 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 ERCC4Q92889 916 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 GJA10Q969M2 543 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 NEIL1Q96FI4 390 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 MBOAT7Q96N66 472 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 SDF4Q9BRK5 362 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 IL23AQ9NPF7 189 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 SETD4Q9NVD3 440 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 GALNT8Q9NY28 637 aa5.41□□□□□ -1.54
CSMD3-208ENST00000497026 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-208ENST00000497026 ZNF215Q9UL58 517 aaPredicted RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms