RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SMPD4Q9NXE4 827 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 SH3BP1Q9Y3L3 701 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 LGALS16A8MUM7 142 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 HHLA1C9JL84 531 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 COCHO43405 550 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 NFATC1O95644 943 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 OLFM2O95897 454 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 ZDHHC11BP0C7U3 371 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 TKTL1P51854 596 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 PTPN5P54829 565 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 PDE4CQ08493 712 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 RSRC2Q7L4I2 434 aaKnown RBP17.23■□□□□ 0.35
SF3A1-209ENST00000496189 GPRIN1Q7Z2K8 1008 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 LUZP1Q86V48 1076 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 TTC30AQ86WT1 665 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 GOLGA1Q92805 767 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 KREMEN1Q96MU8 473 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 LRRC3BQ96PB8 259 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 FOXQ1Q9C009 403 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 RNF38Q9H0F5 515 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 EBF3Q9H4W6 596 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 CCSER2Q9H7U1 834 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 GTSE1Q9NYZ3 720 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 TBC1D14Q9P2M4 693 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 NDRG2Q9UN36 371 aaKnown RBP17.23■□□□□ 0.35
SF3A1-209ENST00000496189 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.23■□□□□ 0.35
SF3A1-209ENST00000496189 PATJQ8NI35 1801 aa17.23■□□□□ 0.35
SF3A1-209ENST00000496189 MYO16Q9Y6X6 1858 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 TICRRQ7Z2Z1 1910 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 ANAPC1Q9H1A4 1944 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 SPECC1L-ADORA2AF8WAN1 911 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 ARNTLO00327 626 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 THAP12O43422 761 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 GALR2O43603 387 aaPredicted RBP17.22■□□□□ 0.35
SF3A1-209ENST00000496189 ZBED1O96006 694 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 SERPINC1P01008 464 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 RARGP13631 454 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 ATP1A3P13637 1013 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 CD72P21854 359 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 BRD2P25440 801 aaKnown RBP17.22■□□□□ 0.35
SF3A1-209ENST00000496189 GNA15P30679 374 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 PLA2G4AP47712 749 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 UBXN1Q04323 297 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 PTK2Q05397 1052 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 LRRC32Q14392 662 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 C10orf120Q5SQS8 335 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 TTC8Q8TAM2 541 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 UBA3Q8TBC4 463 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 PCMTD1Q96MG8 357 aaPredicted RBP17.22■□□□□ 0.35
SF3A1-209ENST00000496189 FAM83CQ9BQN1 747 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 ANP32EQ9BTT0 268 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 HSD3B7Q9H2F3 369 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 CLIC5Q9NZA1 410 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 CFAP97Q9P2B7 532 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 LSM7Q9UK45 103 aaKnown RBP17.22■□□□□ 0.35
SF3A1-209ENST00000496189 DNAJC12Q9UKB3 198 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 CNTN6Q9UQ52 1028 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 USP3Q9Y6I4 520 aa17.22■□□□□ 0.35
SF3A1-209ENST00000496189 HELZP42694 1942 aaKnown RBP17.21■□□□□ 0.35
SF3A1-209ENST00000496189 A0A1W2PQH9 124 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 E2F8A0AVK6 867 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 PI15O43692 258 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 DCNP07585 359 aaKnown RBP17.21■□□□□ 0.35
SF3A1-209ENST00000496189 ZNF132P52740 706 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 BPIFB4P59827 614 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 ZNF445P59923 1031 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 TNK2Q07912 1038 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 RAPGEF1Q13905 1077 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 RAB41Q5JT25 222 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 BTBD8Q5XKL5 378 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 TRIM68Q6AZZ1 485 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 CCDC105Q8IYK2 499 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 DTWD2Q8NBA8 298 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 KCTD13Q8WZ19 329 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 OTUB2Q96DC9 234 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 CYLDQ9NQC7 956 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 DNMT3LQ9UJW3 386 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 STRIP2Q9ULQ0 834 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 DAAM1Q9Y4D1 1078 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 WNT6Q9Y6F9 365 aa17.21■□□□□ 0.35
SF3A1-209ENST00000496189 KMT2EQ8IZD2 1858 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 RNF225M0QZC1 329 aaPredicted RBP17.2■□□□□ 0.34
SF3A1-209ENST00000496189 CTHP32929 405 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 SNX16P57768 344 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 YWHAGP61981 247 aaKnown RBP eCLIP17.2■□□□□ 0.34
SF3A1-209ENST00000496189 ADIGQ0VDE8 80 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 KCNMA1Q12791 1236 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 MEA1Q16626 185 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 IER5LQ5T953 404 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 GJB7Q6PEY0 223 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 KLHDC10Q6PID8 442 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 RNF139Q8WU17 664 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 TFAP2BQ92481 460 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 SHC3Q92529 594 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 SECISBP2LQ93073 1101 aaKnown RBP17.2■□□□□ 0.34
SF3A1-209ENST00000496189 HSFY1Q96LI6 401 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 LSM14BQ9BX40 385 aaKnown RBP17.2■□□□□ 0.34
SF3A1-209ENST00000496189 ULBP1Q9BZM6 244 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 ECT2Q9H8V3 914 aa17.2■□□□□ 0.34
SF3A1-209ENST00000496189 PLCB1Q9NQ66 1216 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms