RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 NMUR1Q9HB89 426 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 NAGPAQ9UK23 515 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 ARHGAP26Q9UNA1 814 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 LGALS16A8MUM7 142 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 LEFTY2O00292 366 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 ARNTLO00327 626 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 SCAMP3O14828 347 aaKnown RBP15.53■□□□□ 0.08
USP4-212ENST00000486549 MED7O43513 233 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 OLFM2O95897 454 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 LCP1P13796 627 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 CD72P21854 359 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 PLA2G4AP47712 749 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 SLC7A9P82251 487 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 PLCB2Q00722 1185 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 UBXN1Q04323 297 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 TNK2Q07912 1038 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 TCF15Q12870 199 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 DRAP1Q14919 205 aaPredicted RBP15.53■□□□□ 0.08
USP4-212ENST00000486549 NFKBIBQ15653 356 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 PKDCCQ504Y2 493 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 RAB41Q5JT25 222 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 SNX30Q5VWJ9 437 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 CCDC186Q7Z3E2 898 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 SIX6OS1Q8N1H7 587 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 TMEM105Q8N8V8 129 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 ULBP1Q9BZM6 244 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 FOXQ1Q9C009 403 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 GKN1Q9NS71 199 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 FAM207AQ9NSI2 230 aaPredicted RBP15.53■□□□□ 0.08
USP4-212ENST00000486549 OSER1Q9NX31 292 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 GTSE1Q9NYZ3 720 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 NUDT5Q9UKK9 219 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 USP3Q9Y6I4 520 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 PIAS3Q9Y6X2 628 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 MIA3Q5JRA6 1907 aa15.53■□□□□ 0.08
USP4-212ENST00000486549 PIEZO1Q92508 2521 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 FOXN3O00409 490 aaPredicted RBP15.52■□□□□ 0.08
USP4-212ENST00000486549 TLR5O60602 858 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 ZBED1O96006 694 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 IRF1P10914 325 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 RARGP13631 454 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 UCHL3P15374 230 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 SOX9P48436 509 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 IFNAR2P48551 515 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 MRE11P49959 708 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 TUBP50607 506 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 KPNA1P52294 538 aaPredicted RBP15.52■□□□□ 0.08
USP4-212ENST00000486549 ZXDBP98169 803 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 PRKCQQ04759 706 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 IQCB1Q15051 598 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 SYCP1Q15431 976 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 PMF1Q6P1K2 205 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 DENND1BQ6P3S1 775 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 SCD5Q86SK9 330 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 ALYREFQ86V81 257 aaKnown RBP15.52■□□□□ 0.08
USP4-212ENST00000486549 ZNF606Q8WXB4 792 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 NDRG1Q92597 394 aaKnown RBP15.52■□□□□ 0.08
USP4-212ENST00000486549 EBF3Q9H4W6 596 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 CBX8Q9HC52 389 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 ST7Q9NRC1 585 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 CFAP97Q9P2B7 532 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 WNT6Q9Y6F9 365 aa15.52■□□□□ 0.08
USP4-212ENST00000486549 MDM4O15151 490 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 TBX18O95935 607 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 RALAP11233 206 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 ARSAP15289 507 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 STARD6P59095 220 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 YWHAGP61981 247 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP4-212ENST00000486549 PTK2Q05397 1052 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 UBXN2BQ14CS0 331 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 C10orf120Q5SQS8 335 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 APTXQ7Z2E3 356 aaKnown RBP15.51■□□□□ 0.07
USP4-212ENST00000486549 LUZP1Q86V48 1076 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 PASD1Q8IV76 773 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 SLC35F5Q8WV83 523 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 OSCP1Q8WVF1 389 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 KCTD13Q8WZ19 329 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 FAM83CQ9BQN1 747 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 NAA15Q9BXJ9 866 aaKnown RBP15.51■□□□□ 0.07
USP4-212ENST00000486549 GANQ9H2C0 597 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 PLCB1Q9NQ66 1216 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 TRPV5Q9NQA5 729 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 CYLDQ9NQC7 956 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP4-212ENST00000486549 DUS2Q9NX74 493 aaKnown RBP15.51■□□□□ 0.07
USP4-212ENST00000486549 SIT1Q9Y3P8 196 aa15.51■□□□□ 0.07
USP4-212ENST00000486549 KANSL1LA0AUZ9 987 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 EPHB6O15197 1021 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 PI15O43692 258 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 TCF3P15923 654 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 CLCN1P35523 988 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 ATP5C1P36542 298 aaKnown RBP15.5■□□□□ 0.07
USP4-212ENST00000486549 PSEN1P49768 467 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 POLR2FP61218 127 aaKnown RBP15.5■□□□□ 0.07
USP4-212ENST00000486549 TPM4P67936 248 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 PDGFRLQ15198 375 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 ITPRIPL2Q3MIP1 535 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 SLC47A2Q86VL8 602 aa15.5■□□□□ 0.07
USP4-212ENST00000486549 DDX42Q86XP3 938 aaKnown RBP eCLIP15.5■□□□□ 0.07
USP4-212ENST00000486549 CCDC105Q8IYK2 499 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms