RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ZNF189O75820 626 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 MAP3K7CLP57077 242 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ART3Q13508 389 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 FASTKD1Q53R41 847 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 DDX53Q86TM3 631 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 AGR3Q8TD06 166 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 MAGEB18Q96M61 343 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 CDC42EP4Q9H3Q1 356 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 SEMA4AQ9H3S1 761 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 AVENQ9NQS1 362 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ABCF3Q9NUQ8 709 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 SMAPO00193 183 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 NFKBIEO00221 500 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 POMCP01189 267 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 ALDH2P05091 517 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 TARSP26639 723 aaKnown RBP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 RAB27AP51159 221 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 MARSP56192 900 aaKnown RBP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 NSUN2Q08J23 767 aaKnown RBP eCLIP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 MAP2K5Q13163 448 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 LAMB3Q13751 1172 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 DNAL1Q4LDG9 190 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 MDH1BQ5I0G3 518 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 MFSD7Q6UXD7 560 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 MFN1Q8IWA4 741 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 REM2Q8IYK8 340 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 ICA1LQ8NDH6 482 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 WWP1Q9H0M0 922 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 WHRNQ9P202 907 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 SNED1Q8TER0 1413 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 E7ENQ6 273 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 M0R2N6 131 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 HNRNPCP07910 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 PCSK7Q16549 785 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 ZACNQ401N2 412 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 EEF1DP3Q658K8 133 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 AADACL2Q6P093 401 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 TTC23LQ6PF05 361 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 ZNF410Q86VK4 478 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 TFB1MQ8WVM0 346 aaKnown RBP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 HIC2Q96JB3 615 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 SENP6Q9GZR1 1112 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 DRC3Q9H069 523 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 CDT1Q9H211 546 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 SMYD3Q9H7B4 428 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 KRT82Q9NSB4 513 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 HES2Q9Y543 173 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 RECQL4O94761 1208 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 MICAL2O94851 1124 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 JAG1P78504 1218 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 PDK2Q15119 407 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 ALKBH8Q96BT7 664 aaKnown RBP11.42□□□□□ -0.58
HDAC6-228ENST00000486227 SHISA4Q96DD7 197 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 PCMTD2Q9NV79 361 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 AP4E1Q9UPM8 1137 aa11.42□□□□□ -0.58
HDAC6-228ENST00000486227 B4GALT5O43286 388 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 FARP2O94887 1054 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 NFICP08651 508 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 BST2Q10589 180 aaKnown RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 BTG3Q14201 252 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SCUBE3Q8IX30 993 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 IPMKQ8NFU5 416 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ACO2Q99798 780 aaKnown RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SPEF2Q9C093 1822 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 E2F8A0AVK6 867 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 F8VP50 259 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 TLR2O60603 784 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 EGFRP00533 1210 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 HARS2P49590 506 aaKnown RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 RTP1P59025 263 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ZNF280AP59817 542 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 DNAJC3Q13217 504 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ZNF268Q14587 947 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 C10orf120Q5SQS8 335 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 PLPPR4Q7Z2D5 763 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 CHSY1Q86X52 802 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 EFHBQ8N7U6 833 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 MRPS31Q92665 395 aaKnown RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 UPF1Q92900 1129 aaKnown RBP eCLIP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 DDX43Q9NXZ2 648 aaKnown RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ETAA1Q9NY74 926 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 TNFSF13BQ9Y275 285 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SCN11AQ9UI33 1791 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SPAG6O75602 509 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SNRPAP09012 282 aaKnown RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 FMO1Q01740 532 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 RCN1Q15293 331 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ERMARDQ5T6L9 678 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SLFN11Q7Z7L1 901 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 AGAP11Q8TF27 550 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ZNF669Q96BR6 464 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-228ENST00000486227 DCLK3Q9C098 648 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 ARFGEF2Q9Y6D5 1785 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 MROH7Q68CQ1 1323 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 hCG_2014768A0A024R1R8 64 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 SPDYE5A6NIY4 337 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 AGPSO00116 658 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 KCNA2P16389 499 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 TKTL1P51854 596 aa11.41□□□□□ -0.58
HDAC6-228ENST00000486227 CTXN3Q4LDR2 81 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms