RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 OSCP1Q8WVF1 389 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 PAGE5Q96GU1 130 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 SPATA17Q96L03 361 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 ZNF518BQ9C0D4 1074 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 SLC32A1Q9H598 525 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 MAGEF1Q9HAY2 307 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 TRPM5Q9NZQ8 1165 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 RCOR1Q9UKL0 485 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 CFAP45Q9UL16 551 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 PCDHGA4Q9Y5G9 962 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 UBE4BO95155 1302 aa11.26□□□□□ -0.61
HMGN1-215ENST00000485550 SMG1Q96Q15 3661 aaKnown RBP11.25□□□□□ -0.61
HMGN1-215ENST00000485550 BPTFQ12830 3046 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 ANTXRLA6NF34 631 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 LRRIQ3A6PVS8 624 aaPredicted RBP11.25□□□□□ -0.61
HMGN1-215ENST00000485550 ACTN4O43707 911 aaKnown RBP11.25□□□□□ -0.61
HMGN1-215ENST00000485550 KLRC4O43908 158 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 SLFN14P0C7P3 912 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 ZXDBP98169 803 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 AMPD2Q01433 879 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 BMT2Q1RMZ1 405 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 EML3Q32P44 896 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 KMT5BQ4FZB7 885 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 FBXO43Q4G163 708 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 TRIM61Q5EBN2 209 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 SCARA5Q6ZMJ2 495 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 ARMCX6Q7L4S7 300 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 TTC30AQ86WT1 665 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 CHCHD4Q8N4Q1 142 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 CD101Q93033 1021 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 ACDQ96AP0 544 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 RNF38Q9H0F5 515 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 XYLT2Q9H1B5 865 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 EXOC1Q9NV70 894 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 TMEM30AQ9NV96 361 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 SMPD4Q9NXE4 827 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 FREM2Q5SZK8 3169 aa11.25□□□□□ -0.61
HMGN1-215ENST00000485550 HELZ2Q9BYK8 2649 aaKnown RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ZNF840PA6NDX5 716 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 LEFTY2O00292 366 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 TRIM66O15016 1216 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 PDIA4P13667 645 aaKnown RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 PFKFB1P16118 471 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ATICP31939 592 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 SEC13P55735 322 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 DLG4P78352 724 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 TAF10Q12962 218 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 USP4Q13107 963 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 NR1H3Q13133 447 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 COL28A1Q2UY09 1125 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 TDRD10Q5VZ19 366 aaKnown RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ATL3Q6DD88 541 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ANO7Q6IWH7 933 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 PDZD3Q86UT5 571 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 PROSER1Q86XN7 944 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 C12orf56Q8IXR9 622 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 B3GALNT2Q8NCR0 500 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 KIAA0895Q8NCT3 520 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 PARD3BQ8TEW8 1205 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ATP2A3Q93084 1043 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 SYAP1Q96A49 352 aaPredicted RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 C8orf48Q96LL4 319 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 KCNK16Q96T55 309 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 MED10Q9BTT4 135 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 NUSAP1Q9BXS6 441 aaKnown RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 B3GNT5Q9BYG0 378 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 SMYD3Q9H7B4 428 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 CGNQ9P2M7 1197 aaKnown RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ARHGAP26Q9UNA1 814 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 GPSM3Q9Y4H4 160 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 CPQQ9Y646 472 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 PCDH15Q96QU1 1955 aa11.24□□□□□ -0.61
HMGN1-215ENST00000485550 ATXN2Q99700 1313 aaKnown RBP11.24□□□□□ -0.61
HMGN1-215ENST00000485550 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 VNN1O95497 513 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 C4BPAP04003 597 aaKnown RBP11.23□□□□□ -0.61
HMGN1-215ENST00000485550 CAPNS1P04632 268 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 FAM163BP0C2L3 166 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 ENGP17813 658 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 FAM193AP78312 1265 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 LSM11P83369 360 aaKnown RBP eCLIP11.23□□□□□ -0.61
HMGN1-215ENST00000485550 LMAN2Q12907 356 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 ORC1Q13415 861 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 NCOA4Q13772 614 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 ZNF699Q32M78 642 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 C2orf27AQ580R0 203 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 ZNF667Q5HYK9 610 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 CEP135Q66GS9 1140 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 C11orf74Q86VG3 221 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 TMEFF1Q8IYR6 380 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 FRMD1Q8N878 549 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 MDGA1Q8NFP4 955 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 RLN3Q8WXF3 142 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 TTLL2Q9BWV7 592 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 SDCBP2Q9H190 292 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 FSCN3Q9NQT6 498 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 TMEM74BQ9NUR3 256 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 DMAC2Q9NW81 257 aa11.23□□□□□ -0.61
HMGN1-215ENST00000485550 CHORDC1Q9UHD1 332 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms