RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP54-211ENST00000474929 RNF26Q9BY78 433 aaPredicted RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 CD93Q9NPY3 652 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 GDF3Q9NR23 364 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 TRPM5Q9NZQ8 1165 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 TUBD1Q9UJT1 453 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 PCDHA4Q9UN74 947 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 PCDHB1Q9Y5F3 818 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 PCDHGA8Q9Y5G5 932 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 RBM8AQ9Y5S9 174 aaKnown RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 SLC37A4O43826 429 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 LZTS3O60299 673 aaPredicted RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 SYNCRIPO60506 623 aaKnown RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 DUSP3P51452 185 aaPredicted RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 PPP2R3AQ06190 1150 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 MESP2Q0VG99 397 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 FUT11Q495W5 492 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 ZC2HC1CQ53FD0 456 aaPredicted RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 LY6G5CQ5SRR4 150 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 NT5DC1Q5TFE4 455 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 GATAD2AQ86YP4 633 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 PIP4P2Q8N4L2 257 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 ACO2Q99798 780 aaKnown RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 LNPKQ9C0E8 428 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 IL25Q9H293 177 aa8.62□□□□□ -1.03
USP54-211ENST00000474929 ZNF768Q9H5H4 540 aaKnown RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 CUEDC1Q9NWM3 386 aaPredicted RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 TPX2Q9ULW0 747 aaKnown RBP8.62□□□□□ -1.03
USP54-211ENST00000474929 TP53BP1Q12888 1972 aaPredicted RBP8.61□□□□□ -1.03
USP54-211ENST00000474929 ANAPC1Q9H1A4 1944 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 UTP20O75691 2785 aaKnown RBP8.61□□□□□ -1.03
USP54-211ENST00000474929 KLF18A0A0U1RQI7 1052 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 C2orf78A6NCI8 922 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 CBX4O00257 560 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 RIOK3O14730 519 aaKnown RBP8.61□□□□□ -1.03
USP54-211ENST00000474929 ZBTB39O15060 712 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 EDN1P05305 212 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 GP1BAP07359 652 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 LILRA4P59901 499 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 DAB2P98082 770 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 HNRNPUQ00839 825 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP54-211ENST00000474929 CLN3Q13286 438 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 HDAC1Q13547 482 aaPredicted RBP8.61□□□□□ -1.03
USP54-211ENST00000474929 SLC45A4Q5BKX6 768 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 CDCP2Q5VXM1 449 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 MAEAQ7L5Y9 396 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 NEK8Q86SG6 692 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 CLEC14AQ86T13 490 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 PIGOQ8TEQ8 1089 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 SSC4DQ8WTU2 575 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 UCMAQ8WVF2 138 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 FUBP3Q96I24 572 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP54-211ENST00000474929 HSD17B14Q9BPX1 270 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 LRRC2Q9BYS8 371 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 FBRSQ9HAH7 460 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 PTPRHQ9HD43 1115 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 SPHK2Q9NRA0 654 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 DNAJC17Q9NVM6 304 aaKnown RBP8.61□□□□□ -1.03
USP54-211ENST00000474929 DKK3Q9UBP4 350 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 RCAN3Q9UKA8 241 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 RAD54BQ9Y620 910 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 CPQQ9Y646 472 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 ZFHX3Q15911 3703 aa8.61□□□□□ -1.03
USP54-211ENST00000474929 ADAMTS3O15072 1205 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CYP26A1O43174 497 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CACNG3O60359 315 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CSO75390 466 aaKnown RBP8.6□□□□□ -1.03
USP54-211ENST00000474929 TOM1L1O75674 476 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 OLFM2O95897 454 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CYP11B2P19099 503 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 PROZP22891 400 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CDC27P30260 824 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 GRIK1P39086 918 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 MORC3Q14149 939 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CFAP221Q4G0U5 840 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 FHL5Q5TD97 284 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 C20orf194Q5TEA3 1177 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 SFMBT2Q5VUG0 894 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 MIB1Q86YT6 1006 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 TMPRSS6Q8IU80 811 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CCDC83Q8IWF9 413 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 BLIDQ8IZY5 108 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 SLC46A1Q96NT5 459 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CCSER1Q9C0I3 900 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 BTBD1Q9H0C5 482 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 SLC6A17Q9H1V8 727 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 TMEM134Q9H6X4 195 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 ERVMER34-1Q9H9K5 563 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 USP29Q9HBJ7 922 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP54-211ENST00000474929 VPS54Q9P1Q0 977 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 CFAP97Q9P2B7 532 aa8.6□□□□□ -1.03
USP54-211ENST00000474929 VPS37CA5D8V6 355 aaPredicted RBP8.59□□□□□ -1.03
USP54-211ENST00000474929 ARHGEF35A5YM69 484 aa8.59□□□□□ -1.03
USP54-211ENST00000474929 CDRT15L2A8MXV6 281 aa8.59□□□□□ -1.03
USP54-211ENST00000474929 KCNJ18B7U540 433 aa8.59□□□□□ -1.03
USP54-211ENST00000474929 KCNK3O14649 394 aa8.59□□□□□ -1.03
USP54-211ENST00000474929 MAGEC1O60732 1142 aa8.59□□□□□ -1.03
USP54-211ENST00000474929 SEMA4FO95754 770 aa8.59□□□□□ -1.03
USP54-211ENST00000474929 DDAH2O95865 285 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms