RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 PEBP4Q96S96 227 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 EPN3Q9H201 632 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 DPEP3Q9H4B8 488 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 CCDC134Q9H6E4 229 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 ZWILCHQ9H900 591 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 PNPLA8Q9NP80 782 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.95□□□□□ -1.14
COL6A3-208ENST00000468792 KLK14Q9P0G3 267 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 SRRDQ9UH36 339 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 CDH9Q9ULB4 789 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 ABT1Q9ULW3 272 aaKnown RBP7.95□□□□□ -1.14
COL6A3-208ENST00000468792 PADI3Q9ULW8 664 aa7.95□□□□□ -1.14
COL6A3-208ENST00000468792 SF3B1O75533 1304 aaKnown RBP eCLIP7.95□□□□□ -1.14
COL6A3-208ENST00000468792 E7EVH7 732 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 M0QZQ0 153 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 TULP2O00295 520 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 CDH16O75309 829 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 DAB1O75553 588 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 EOMESO95936 686 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 SHBGP04278 402 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RBP3P10745 1247 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 CHKAP35790 457 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RGS7P49802 495 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 CDH6P55285 790 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PRMT2P55345 433 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 EIF3EP60228 445 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 MAGOHP61326 146 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 YWHAZP63104 245 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 GNGT1P63211 74 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 FAM189BP81408 668 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 MRPS5P82675 430 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ADCY1Q08828 1119 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 GRIK3Q13003 919 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 GPS1Q13098 491 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 AUHQ13825 339 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 LLGL1Q15334 1064 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PTGISQ16647 500 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 SMTNL2Q2TAL5 461 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ANKRD20A8PQ5CZ79 823 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RAB41Q5JT25 222 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 KCNT1Q5JUK3 1230 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 FAM171BQ6P995 826 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PPP1R21Q6ZMI0 780 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PAQR9Q6ZVX9 377 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 CENPUQ71F23 418 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ZNF598Q86UK7 904 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PIGZQ86VD9 579 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 OSTM1Q86WC4 334 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RFX6Q8HWS3 928 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PLD5Q8N7P1 536 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 NAT8LQ8N9F0 302 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 MYCBPAPQ8TBZ2 947 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RSAD2Q8WXG1 361 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RSPH1Q8WYR4 309 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 IRGQQ8WZA9 623 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PRCCQ92733 491 aaPredicted RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 P3H4Q92791 437 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PIWIL1Q96J94 861 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RBM15Q96T37 977 aaKnown RBP eCLIP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 GAD1Q99259 594 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ACBD6Q9BR61 282 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 TRIM62Q9BVG3 475 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 APOL6Q9BWW8 343 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ARHGAP39Q9C0H5 1083 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 AGO3Q9H9G7 860 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 USP29Q9HBJ7 922 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PCDH18Q9HCL0 1135 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 CSNK1G1Q9HCP0 422 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 CNGB3Q9NQW8 809 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 FAM49BQ9NUQ9 324 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 KLHL11Q9NVR0 708 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 EURLQ9NYK6 297 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 NINJ2Q9NZG7 142 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PAK5Q9P286 719 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PCSK1NQ9UHG2 260 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 DDX20Q9UHI6 824 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 SLC24A2Q9UI40 661 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PRDM4Q9UKN5 801 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ZMYND8Q9ULU4 1186 aaPredicted RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 NOVA2Q9UNW9 492 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 RAD54BQ9Y620 910 aa7.94□□□□□ -1.14
COL6A3-208ENST00000468792 COL4A4P53420 1690 aaPredicted RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 ATXN2Q99700 1313 aaKnown RBP7.94□□□□□ -1.14
COL6A3-208ENST00000468792 PCNTO95613 3336 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 DNAH12Q6ZR08 3092 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 A0A087WUV0 522 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 HACD1B0YJ81 288 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TMEM189-UBE2V1I3L0A0 370 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 SGK1O00141 431 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 KIF3CO14782 793 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 APOL1O14791 398 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 CHADO15335 359 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TRAPPC3O43617 180 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 SPAG6O75602 509 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 FAM107AO95990 144 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 CD48P09326 243 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 PDGFRBP09619 1106 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 FAM200BP0CF97 657 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ODC1P11926 461 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms