RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 OTOP3Q7RTS5 596 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 TMC6Q7Z403 805 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 ZNF605Q86T29 641 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 CDR2LQ86X02 465 aaPredicted RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 ZBTB8OSQ8IWT0 167 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 DHX40Q8IX18 779 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 KIAA0319LQ8IZA0 1049 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 GUF1Q8N442 669 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 CSGALNACT2Q8N6G5 542 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 U2AF1L4Q8WU68 220 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 FBXW5Q969U6 566 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 TCHPQ9BT92 498 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 JAM3Q9BX67 310 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 CELF4Q9BZC1 486 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 GTPBP4Q9BZE4 634 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 INO80BQ9C086 356 aaPredicted RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 MCOLN1Q9GZU1 580 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 TRPV6Q9H1D0 765 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 GRPEL1Q9HAV7 217 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 SAMSN1Q9NSI8 373 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 TRMT13Q9NUP7 481 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 SEL1LQ9UBV2 794 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 KCNG1Q9UIX4 513 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 RWDD2AQ9UIY3 292 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 TBX20Q9UMR3 447 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 EXOC7Q9UPT5 735 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 NFE2L3Q9Y4A8 694 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 GRIN2DO15399 1336 aa4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 MYH9P35579 1960 aaKnown RBP4.44□□□□□ -1.7
TMEM39A-204ENST00000468545 A0A0U1RQG5 324 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 SMIM35A0A1B0GVV1 85 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 BICDL2A1A5D9 508 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CCDC66A2RUB6 948 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 TISP43B9A030 160 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 H0YCG3 227 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 M0QZ92 97 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 DNM1LO00429 736 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 HGSO14964 777 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CETN3O15182 167 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 EIF3DO15371 548 aaKnown RBP eCLIP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 OPA1O60313 960 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PQBP1O60828 265 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 SEMA7AO75326 666 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 NPTXRO95502 500 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 FGFR1OPO95684 399 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CAVIN2O95810 425 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 SERPINC1P01008 464 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PRKCBP05771 671 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CST5P28325 142 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 VIPR1P32241 457 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 HOXD13P35453 343 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PPP1R2P41236 205 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 NAMPTP43490 491 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 MTIF2P46199 727 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 LIG4P49917 911 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 GPC3P51654 580 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 ZNF131P52739 623 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 GYS2P54840 703 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 NCKAP1LP55160 1127 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 NKX3-2P78367 333 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PRR5P85299 388 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 GTF2BQ00403 316 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 MYL5Q02045 173 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 ADAM9Q13443 819 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PTPN21Q16825 1174 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 C21orf62-AS1Q17RA5 79 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CCDC40Q4G0X9 1142 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 TM4SF20Q53R12 229 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 HABP4Q5JVS0 413 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CENPPQ6IPU0 288 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 ZCCHC8Q6NZY4 707 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 EPM2AIP1Q7L775 607 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CATSPER4Q7RTX7 472 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 RSPH3Q86UC2 560 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 DRC7Q8IY82 874 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 FBXO15Q8NCQ5 510 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 SLC17A8Q8NDX2 589 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 TMEM161BQ8NDZ6 487 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PIP4K2CQ8TBX8 421 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 PHOSPHO1Q8TCT1 267 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 DIS3LQ8TF46 1054 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 POMGNT1Q8WZA1 660 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 SAAL1Q96ER3 474 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 CPB2Q96IY4 423 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 ZNF333Q96JL9 665 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 ZBTB45Q96K62 511 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 MED15Q96RN5 788 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 FIZ1Q96SL8 496 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 KCNJ15Q99712 375 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 BPIFA3Q9BQP9 254 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 TARS2Q9BW92 718 aaKnown RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 GCOM2Q9BZD3 368 aaPredicted RBP4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 TRIM5Q9C035 493 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 C2orf40Q9H1Z8 148 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 VPS16Q9H269 839 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 TMEM206Q9H813 350 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 MMRN2Q9H8L6 949 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 C17orf75Q9HAS0 396 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 RXFP1Q9HBX9 757 aa4.43□□□□□ -1.7
TMEM39A-204ENST00000468545 SLC6A20Q9NP91 592 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms