RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.06■□□□□ 0.644e-8■■■■■ 30.8
SQSTM1-204ENST00000453046 TMEM30AQ9NV96 361 aa19.06■□□□□ 0.64
SQSTM1-204ENST00000453046 GMEB2Q9UKD1 530 aa19.06■□□□□ 0.64
SQSTM1-204ENST00000453046 GPR179Q6PRD1 2367 aa19.06■□□□□ 0.64
SQSTM1-204ENST00000453046 LEFTY2O00292 366 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 AP1G2O75843 785 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 NFATC1O95644 943 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 ASS1P00966 412 aaKnown RBP19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 TRIM49P0CI25 452 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 TRIM49CP0CI26 452 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 TCF3P15923 654 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 DRD1P21728 446 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 GCLMP48507 274 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 NR1I3Q14994 352 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 LPAL2Q16609 132 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 VWA3BQ502W6 1294 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 MIIPQ5JXC2 388 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 SPOPLQ6IQ16 392 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 LONP2Q86WA8 852 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 PDZD8Q8NEN9 1154 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 CHFRQ96EP1 664 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 SMARCD1Q96GM5 515 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 RNF38Q9H0F5 515 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 VPS16Q9H269 839 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 LINC00597Q9H2U6 94 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 SMPD4Q9NXE4 827 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 CPQQ9Y646 472 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 PTPRDP23468 1912 aa19.05■□□□□ 0.64
SQSTM1-204ENST00000453046 GREB1Q4ZG55 1949 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 K7ESF4 209 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 RNF40O75150 1001 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 EGFP01133 1207 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 MBL2P11226 248 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 DEKP35659 375 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 SLC7A9P82251 487 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 DMWDQ09019 674 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 ORC1Q13415 861 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 C1orf220Q5T0J3 134 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 UNC93AQ86WB7 457 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 VSTM4Q8IW00 320 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 GPR161Q8N6U8 529 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 CCDC150Q8NCX0 1101 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 OVCA2Q8WZ82 227 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 CD101Q93033 1021 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 NDST4Q9H3R1 872 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 KRT82Q9NSB4 513 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 C2orf42Q9NWW7 574 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 CHORDC1Q9UHD1 332 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 SLC8A2Q9UPR5 921 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 ANAPC1Q9H1A4 1944 aa19.04■□□□□ 0.64
SQSTM1-204ENST00000453046 ITIH6Q6UXX5 1313 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 A0A1W2PQC6 194 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 OAS1P00973 400 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 CCDC130P13994 396 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 CNR2P34972 360 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 ASPAP45381 313 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 SLC5A3P53794 718 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 MCCD1P59942 119 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 ZXDBP98169 803 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 SIM2Q14190 667 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 FBXO43Q4G163 708 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 FKBP15Q5T1M5 1219 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 PAQR9Q6ZVX9 377 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 FUKQ8N0W3 1084 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 CRYBG2Q8N1P7 616 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 SCAMP5Q8TAC9 235 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 SLC2A14Q8TDB8 520 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 TAS1R2Q8TE23 839 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 FBRSL1Q9HCM7 1045 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 FAM49BQ9NUQ9 324 aa19.03■□□□□ 0.64
SQSTM1-204ENST00000453046 GOLGA6L6A8MZA4 724 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 PES1O00541 588 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 SLC9A3R1O14745 358 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 PBX1P40424 430 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 UBXN1Q04323 297 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 PPP3CAQ08209 521 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 DCAF17Q5H9S7 520 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 HECTD3Q5T447 861 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 NAIF1Q69YI7 327 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 LAIR1Q6GTX8 287 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 PKN3Q6P5Z2 889 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 CEP68Q76N32 757 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 DDX42Q86XP3 938 aaKnown RBP eCLIP19.02■□□□□ 0.642e-11■□□□□ 10.2
SQSTM1-204ENST00000453046 SLC35C1Q96A29 364 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 DNAI2Q9GZS0 605 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 TMEM8AQ9HCN3 771 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 COMMD8Q9NX08 183 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 CFAP97Q9P2B7 532 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 HMGXB4Q9UGU5 601 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 USP18Q9UMW8 372 aa19.02■□□□□ 0.64
SQSTM1-204ENST00000453046 TNFRSF10BO14763 440 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 TEX33O43247 280 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 HRO43593 1189 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 OLFM2O95897 454 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 AFPP02771 609 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 FAM200BP0CF97 657 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 CD58P19256 250 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 ADORA2BP29275 332 aa19.01■□□□□ 0.63
SQSTM1-204ENST00000453046 HOXA6P31267 233 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms