RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 FAM124BQ9H5Z6 455 aaPredicted RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 SYNCQ9H7C4 482 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 PTPRHQ9HD43 1115 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 PAPOLBQ9NRJ5 636 aaKnown RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 KCNK4Q9NYG8 393 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 CHMP2BQ9UQN3 213 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 TTLL13PA6NNM8 815 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 KBTBD13C9JR72 458 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 FARP2O94887 1054 aaPredicted RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 ERBB2P04626 1255 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 SNRPAP09012 282 aaKnown RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 PYGBP11216 843 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 NEFHP12036 1026 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 CD19P15391 556 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 PAPOLAP51003 745 aaKnown RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 ZNF143P52747 638 aaPredicted RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 OCRLQ01968 901 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 CNTN2Q02246 1040 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 CCDC6Q16204 474 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 KBTBD12Q3ZCT8 623 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 ZNF667Q5HYK9 610 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 ANGEL2Q5VTE6 544 aaKnown RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 ATG16L1Q676U5 607 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 SLC30A9Q6PML9 568 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 LRRC74BQ6ZQY2 392 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 ZC3H18Q86VM9 953 aaKnown RBP10.19□□□□□ -0.78
CD44-206ENST00000415148 VPS52Q8N1B4 723 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 SEPT1Q8WYJ6 367 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 MCUR1Q96AQ8 359 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 MTBPQ96DY7 904 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 C7orf26Q96N11 449 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 FAM111AQ96PZ2 611 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 CPXM1Q96SM3 734 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 SH3GL3Q99963 347 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 NMUR2Q9GZQ4 415 aa10.19□□□□□ -0.78
CD44-206ENST00000415148 IGKV6-21A0A0C4DH24 114 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 COPEO14579 308 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 AHCYL1O43865 530 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 MAGEC1O60732 1142 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 HMGCRP04035 888 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 UBTFL6P0CB48 400 aaPredicted RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 PRKCHP24723 683 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 ATICP31939 592 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 MAGEA6P43360 314 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 SERPINB4P48594 390 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 RAP1GDS1P52306 607 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 HMGCS2P54868 508 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 SLC34A1Q06495 639 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 LAMTOR4Q0VGL1 99 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 THOC5Q13769 683 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 PDK2Q15119 407 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 TAF5Q15542 800 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 CWF19L1Q69YN2 538 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 IRGCQ6NXR0 463 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 TMPRSS6Q8IU80 811 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 MAP7D3Q8IWC1 876 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 USP6NLQ92738 828 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 TTC17Q96AE7 1141 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 FAF2Q96CS3 445 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 CNPY3Q9BT09 278 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 PPP1R12CQ9BZL4 782 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 IQCGQ9H095 443 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 CYP3A43Q9HB55 503 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 USP29Q9HBJ7 922 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.18□□□□□ -0.78
CD44-206ENST00000415148 STX18Q9P2W9 335 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 ZNF212Q9UDV6 495 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 PCSK1NQ9UHG2 260 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 PLLPQ9Y342 182 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 PCNTO95613 3336 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 LCTP09848 1927 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 F8W8V4 182 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 ACKR2O00590 384 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 AVILO75366 819 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 USP1O94782 785 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 TOMM70O94826 608 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 SNUPNO95149 360 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 C1QAP02745 245 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 RARBP10826 455 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 MYL2P10916 166 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 VDRP11473 427 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 TGM2P21980 687 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 UBA1P22314 1058 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 CCNFP41002 786 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 YWHAGP61981 247 aaKnown RBP eCLIP10.18□□□□□ -0.78
CD44-206ENST00000415148 PTPN11Q06124 597 aaPredicted RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 TBCCQ15814 346 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 NBPF12Q5TAG4 269 aaPredicted RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 SCARA5Q6ZMJ2 495 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 RNF217Q8TC41 542 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 LRRN4Q8WUT4 740 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 JDP2Q8WYK2 163 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 HSPH1Q92598 858 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 TMEM176AQ96HP8 235 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 RNF157Q96PX1 679 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 CALN1Q9BXU9 219 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 VRTNQ9H8Y1 702 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 NXF1Q9UBU9 619 aaKnown RBP10.18□□□□□ -0.78
CD44-206ENST00000415148 KIAA1257Q9ULG3 409 aa10.18□□□□□ -0.78
CD44-206ENST00000415148 BCLAF3A2AJT9 711 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms