RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TMCO6Q96DC7 493 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 TRIM9Q9C026 710 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 GTF3C4Q9UKN8 822 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 FRMPD2Q68DX3 1309 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 SHQ1Q6PI26 577 aaKnown RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 IFNEQ86WN2 208 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 FARP1Q9Y4F1 1045 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 TARBP1Q13395 1621 aaKnown RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 TEX33O43247 280 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 NDUFS3O75489 264 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ATP6AP1LQ52LC2 224 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PDPK2PQ6A1A2 396 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 DENND5AQ6IQ26 1287 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 CACTIN-AS1Q8N1I8 211 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 RIN2Q8WYP3 895 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 INTS13Q9NVM9 706 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 CHP2O43745 196 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ANXA9O76027 345 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 CCNE2O96020 404 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 GYS1P13807 737 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 FMO5P49326 533 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF284Q2VY69 593 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 A2ML1A8K2U0 1454 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 SDR42E2A6NKP2 422 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 CDK16Q00536 496 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 TTLL9Q3SXZ7 439 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 DPP8Q6V1X1 898 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ATPAF2Q8N5M1 289 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ATG16L2Q8NAA4 619 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 LEMD2Q8NC56 503 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PRDM16Q9HAZ2 1276 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF624Q9P2J8 865 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PTPRKQ15262 1439 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ABL1P00519 1130 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 ACADSBP45954 432 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 EFNA5P52803 228 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 VPS72Q15906 364 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SCARA3Q6AZY7 606 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SYCE2Q6PIF2 218 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 PTCD3Q96EY7 689 aaKnown RBP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 FAM111AQ96PZ2 611 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 FAM213AQ9BRX8 229 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 CAPZA2P47755 286 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 CCNA1P78396 465 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 BNIP2Q12982 314 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF235Q14590 738 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 TMC3Q7Z5M5 1100 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 NSMCE2Q96MF7 247 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 TBCCD1Q9NVR7 557 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 CDH9Q9ULB4 789 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 PGK2P07205 417 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SERPINB5P36952 375 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 CDC42EP1Q00587 391 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 NEDD8Q15843 81 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 EPC2Q52LR7 807 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF605Q86T29 641 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SLC13A5Q86YT5 568 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 DCUN1D1Q96GG9 259 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 FICDQ9BVA6 458 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 GPN1Q9HCN4 374 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 AKT3Q9Y243 479 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 TRIM43BA6NCK2 446 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 IL5RAQ01344 420 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 NFIL3Q16649 462 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 DENND1BQ6P3S1 775 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 HPS4Q9NQG7 708 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 NCAM2O15394 837 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 TPI1P60174 286 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 PLIN5Q00G26 463 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 DRG1Q9Y295 367 aaKnown RBP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SUPT3HB4E1H0 165 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 PRPF4O43172 522 aaKnown RBP eCLIP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SEMA3DO95025 777 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 DNAJB2P25686 324 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 MSLNQ13421 630 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 FAM92BQ6ZTR7 304 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 ARCQ7LC44 396 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 SGF29Q96ES7 293 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 TNIP3Q96KP6 325 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 PLEKHG4BQ96PX9 1271 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 NUDT5Q9UKK9 219 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 PCDHGA3Q9Y5H0 932 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 RPL26P61254 145 aaKnown RBP13.28□□□□□ -0.28
COL6A3-206ENST00000409809 GPD1LQ8N335 351 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF560Q96MR9 790 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 FRMPD1Q5SYB0 1578 aa13.28□□□□□ -0.28
COL6A3-206ENST00000409809 ATG7O95352 703 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 MTF1Q14872 753 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 RAB43Q86YS6 212 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 CMTR1Q8N1G2 835 aaKnown RBP13.27□□□□□ -0.28
COL6A3-206ENST00000409809 ACTRT2Q8TDY3 377 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 ALG13Q9NP73 1137 aaKnown RBP13.27□□□□□ -0.28
COL6A3-206ENST00000409809 PRPF19Q9UMS4 504 aaKnown RBP13.27□□□□□ -0.28
COL6A3-206ENST00000409809 PLEKHG3A1L390 1219 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 OGNP20774 298 aaKnown RBP13.27□□□□□ -0.28
COL6A3-206ENST00000409809 CDH18Q13634 790 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 PDK2Q15119 407 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 REXO1L1PQ8IX06 675 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 BARHL2Q9NY43 387 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 ACADLP28330 430 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms