RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RDH11Q8TC12 318 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 UBE2E3Q969T4 207 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 WRNIP1Q96S55 665 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CPNE1Q99829 537 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 BBS2Q9BXC9 721 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 GPR63Q9BZJ6 419 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 MUC13Q9H3R2 512 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 VAV3Q9UKW4 847 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SH3BP1Q9Y3L3 701 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CDC42BPAQ5VT25 1732 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 A0A087X1B8 175 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 USP27XA6NNY8 438 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TBC1D12O60347 775 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 NMT2O60551 498 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SNAPC5O75971 98 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 WFS1O76024 890 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 WARSP23381 471 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 NUDT2P50583 147 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CCR3P51677 355 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 RCN1Q15293 331 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 NFE2Q16621 373 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ATAD3BQ5T9A4 648 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 INTS11Q5TA45 600 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 MZT2BQ6NZ67 158 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FAM92BQ6ZTR7 304 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 REXO1L1PQ8IX06 675 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 NOA1Q8NC60 698 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FAM84BQ96KN1 310 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 KCNF1Q9H3M0 494 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 HPSEQ9Y251 543 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 MYRFQ9Y2G1 1151 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 KIF28PB7ZC32 967 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PIK3CDO00329 1044 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 BIRC5O15392 142 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 LDOC1O95751 146 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 GP5P40197 560 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 MAPK9P45984 424 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 DDR2Q16832 855 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PRR5LQ6MZQ0 368 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 AAGABQ6PD74 315 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 LRRC34Q8IZ02 419 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 MREGQ8N565 214 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 OR6J1Q8NGC5 347 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 HINFPQ9BQA5 517 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 BTBD10Q9BSF8 475 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TSEN34Q9BSV6 310 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CAAP1Q9H8G2 361 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 GPAMQ9HCL2 828 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 HEY2Q9UBP5 337 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 LNPEPQ9UIQ6 1025 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 KLHL20Q9Y2M5 609 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PCDHA3Q9Y5H8 950 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ABCA9Q8IUA7 1624 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ADGRB3O60242 1522 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 A0A088AWK7 358 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 GSAPA4D1B5 854 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 XPO1O14980 1071 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 DLGAP3O95886 979 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PAEPP09466 180 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TXNP10599 105 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 LCP1P13796 627 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CPA3P15088 417 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF10P21506 573 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PTPN3P26045 913 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 RXRBP28702 533 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SLC45A4Q5BKX6 768 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PDPK2PQ6A1A2 396 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ZBTB49Q6ZSB9 765 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF786Q8N393 782 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 DPP10Q8N608 796 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SPIRE2Q8WWL2 714 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 C9orf72Q96LT7 481 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 Q96MT0 163 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 RPRD1AQ96P16 312 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CNGB3Q9NQW8 809 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ZSCAN32Q9NX65 697 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ARHGAP28Q9P2N2 729 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ATP6V1HQ9UI12 483 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TBX20Q9UMR3 447 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TMX2Q9Y320 296 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 TRIM13O60858 407 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CAND2O75155 1236 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CAPN15O75808 1086 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GUCY1A2P33402 732 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 DRG2P55039 364 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GCNT1Q02742 428 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PPIL2Q13356 520 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF177Q13360 481 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ANKS6Q68DC2 871 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 STYK1Q6J9G0 422 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GPAT2Q6NUI2 795 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GALNT18Q6P9A2 607 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RNF135Q8IUD6 432 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 HERC6Q8IVU3 1022 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GSPT2Q8IYD1 628 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RFWD2Q8NHY2 731 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 MTERF3Q96E29 417 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms