RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MTMR11A4FU01 709 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 HHLA1C9JL84 531 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PPM1AP35813 382 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MATKP42679 507 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 RPL34P49207 117 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 SULT1E1P49888 294 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 DAOAP59103 153 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PITX1P78337 314 aaPredicted RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 ROR1Q01973 937 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 C9orf50Q5SZB4 431 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 VSTM1Q6UX27 236 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 TMC7Q7Z402 723 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NIPA2Q8N8Q9 360 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 KLHL23Q8NBE8 558 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 KCTD6Q8NC69 237 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 SLC7A14Q8TBB6 771 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 ACTRT1Q8TDG2 376 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 GIPC2Q8TF65 315 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PIK3R5Q8WYR1 880 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 HERVK_113Q902F9 699 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 RAPGEF5Q92565 580 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 FUBP3Q96I24 572 aaKnown RBP eCLIP3.88□□□□□ -1.792e-9■■■□□ 14.6
RTN4-208ENST00000404909 TBCBQ99426 244 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 KRT12Q99456 494 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CLSTN3Q9BQT9 956 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 POPDC2Q9HBU9 364 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CHST7Q9NS84 486 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MTRRQ9UBK8 725 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 RNF14Q9UBS8 474 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 LCMT1Q9UIC8 334 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NUDT5Q9UKK9 219 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MAGED2Q9UNF1 606 aaPredicted RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 NR2E1Q9Y466 385 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 TCRBV7S2A1N4TA0A589 114 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 M0QYT0 321 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 TRIM66O15016 1216 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 SART1O43290 800 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 CTIFO43310 598 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 LTFP02788 710 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 KRT7P08729 469 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 SPATA31D3P0C874 917 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 RALAP11233 206 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 KRT10P13645 584 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CTNNB1P35222 781 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 USP46P62068 366 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 HTRA4P83105 476 aaPredicted RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 DSG1Q02413 1049 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MTMR3Q13615 1198 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 PPP6R3Q5H9R7 873 aaPredicted RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 RAB41Q5JT25 222 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 BSPRYQ5W0U4 402 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 SPATA31D4Q6ZUB0 917 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 DENND5BQ6ZUT9 1274 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 DDX53Q86TM3 631 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 FAM131BQ86XD5 332 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NUP93Q8N1F7 819 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MICAL1Q8TDZ2 1067 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 SLC9A7Q96T83 725 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 NAP1L3Q99457 506 aaPredicted RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 FAM118BQ9BPY3 351 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 CALN1Q9BXU9 219 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 ADAM33Q9BZ11 813 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 DDX47Q9H0S4 455 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 CYP4F11Q9HBI6 524 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 MRPL17Q9NRX2 175 aaKnown RBP3.88□□□□□ -1.79
RTN4-208ENST00000404909 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.88□□□□□ -1.79
RTN4-208ENST00000404909 GPATCH2LQ9NWQ4 482 aa3.88□□□□□ -1.79
RTN4-208ENST00000404909 ALPK3Q96L96 1907 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 GOLGA6L10A0A0M3HER8 536 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 CES2O00748 559 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PRRG1O14668 218 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TBC1D4O60343 1298 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ZMYND10O75800 440 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TRUB2O95900 331 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 CD48P09326 243 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RARAP10276 462 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PCK1P35558 622 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CETN2P41208 172 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 MAGEA10P43363 369 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 PGFP49763 221 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CDH6P55285 790 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 HDAC4P56524 1084 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DYNLT1P63172 113 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SLC7A5Q01650 507 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SLC25A11Q02978 314 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 TAF12Q16514 161 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SLC25A52Q3SY17 297 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 BTBD8Q5XKL5 378 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 FAM109BQ6ICB4 259 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 SLC8B1Q6J4K2 584 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 MFSD7Q6UXD7 560 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RSRC2Q7L4I2 434 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 SPRED2Q7Z698 418 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ANKS1BQ7Z6G8 1248 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SLC13A5Q86YT5 568 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 KATNAL2Q8IYT4 538 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RASGEF1CQ8N431 466 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SPPL2BQ8TCT7 592 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RNF34Q969K3 372 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms