RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 VWA5AO00534 786 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 KRT34O76011 436 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 RBL1P28749 1068 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 SCYL2Q6P3W7 929 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 SDCBP2Q9H190 292 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 PLA2G4CQ9UP65 541 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 PLA2G6O60733 806 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 RFPL1O75677 317 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 LMNAP02545 664 aaKnown RBP21.82■■□□□ 1.08
CTCF-202ENST00000401394 KCNA4P22459 653 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 RTP1P59025 263 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 FKBP1AP62942 108 aaKnown RBP21.82■■□□□ 1.08
CTCF-202ENST00000401394 SLC18A2Q05940 514 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 LRRC38Q5VT99 294 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 TRIM50Q86XT4 487 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 GALNT15Q8N3T1 639 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 PPFIBP2Q8ND30 876 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 E2F7Q96AV8 911 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 ADGRA2Q96PE1 1338 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 WNT10BO00744 389 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 B4GALT5O43286 388 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 DNAJC6O75061 913 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 TOM1L1O75674 476 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 TBXAS1P24557 533 aaPredicted RBP21.82■■□□□ 1.08
CTCF-202ENST00000401394 CNTN2Q02246 1040 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 CEP128Q6ZU80 1094 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 ZNF398Q8TD17 642 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 ZNF778Q96MU6 729 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 TRIM4Q9C037 500 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 VCXQ9H320 206 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 USP18Q9UMW8 372 aa21.82■■□□□ 1.08
CTCF-202ENST00000401394 ASPAP45381 313 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 CFAP157Q5JU67 520 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 NUDCD3Q8IVD9 361 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 NDUFAF2Q8N183 169 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 SMC1BQ8NDV3 1235 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 ANKRD27Q96NW4 1050 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 ZC3H7BQ9UGR2 993 aaKnown RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 KIF3CO14782 793 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 MCF2LO15068 1137 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 CCND2P30279 289 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 RPL10AP62906 217 aaKnown RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 CDC16Q13042 620 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 CA9Q16790 459 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 CAND1Q86VP6 1230 aaKnown RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.81■■□□□ 1.08
CTCF-202ENST00000401394 PORCNQ9H237 461 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 SSU72Q9NP77 194 aaKnown RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 DDX56Q9NY93 547 aaKnown RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 PLLPQ9Y342 182 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 STYXL1Q9Y6J8 313 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 OR6B1O95007 311 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 ATG7O95352 703 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 AGR3Q8TD06 166 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 PRPF31Q8WWY3 499 aaKnown RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 PDGFDQ9GZP0 370 aaPredicted RBP21.81■■□□□ 1.08
CTCF-202ENST00000401394 C17orf75Q9HAS0 396 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 RNF19AQ9NV58 838 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 PCDHGB4Q9UN71 923 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 PCDHGB5Q9Y5G0 923 aa21.81■■□□□ 1.08
CTCF-202ENST00000401394 MYO18AQ92614 2054 aaKnown RBP21.8■■□□□ 1.08
CTCF-202ENST00000401394 MSX2P35548 267 aaPredicted RBP21.8■■□□□ 1.08
CTCF-202ENST00000401394 RGS7P49802 495 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 TRPC3Q13507 836 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 ZNF699Q32M78 642 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 SFT2D3Q587I9 215 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 PCGF5Q86SE9 256 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 XYLT1Q86Y38 959 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 MTBPQ96DY7 904 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 SYNPO2Q9UMS6 1093 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 KIAA1217Q5T5P2 1943 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 WDR46O15213 610 aaKnown RBP21.8■■□□□ 1.08
CTCF-202ENST00000401394 HMGCRP04035 888 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 ROR1Q01973 937 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 ROR2Q01974 943 aaKnown RBP21.8■■□□□ 1.08
CTCF-202ENST00000401394 TCHHL1Q5QJ38 904 aaPredicted RBP21.8■■□□□ 1.08
CTCF-202ENST00000401394 HACE1Q8IYU2 909 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 TRAPPC12Q8WVT3 735 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 CEP41Q9BYV8 373 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 NIF3L1Q9GZT8 377 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 PGAP2Q9UHJ9 254 aa21.8■■□□□ 1.08
CTCF-202ENST00000401394 ARRB2P32121 409 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 GRIA2P42262 883 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 PGGT1BP53609 377 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 ATXN1P54253 815 aaKnown RBP21.79■■□□□ 1.08
CTCF-202ENST00000401394 KCNJ11Q14654 390 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 RBBP5Q15291 538 aaKnown RBP21.79■■□□□ 1.08
CTCF-202ENST00000401394 PPP6R3Q5H9R7 873 aaPredicted RBP21.79■■□□□ 1.08
CTCF-202ENST00000401394 RASIP1Q5U651 963 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 CHSY1Q86X52 802 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 PPP1R36Q96LQ0 422 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 TFE3P19532 575 aaPredicted RBP21.79■■□□□ 1.08
CTCF-202ENST00000401394 GSTT1P30711 240 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 KRT72Q14CN4 511 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 EML3Q32P44 896 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 FAM102AQ5T9C2 384 aaPredicted RBP21.79■■□□□ 1.08
CTCF-202ENST00000401394 ADGRF2Q8IZF7 708 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 GBP5Q96PP8 586 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 GMLQ99445 158 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 XYLT2Q9H1B5 865 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms