RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 ARCQ7LC44 396 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 DDX42Q86XP3 938 aaKnown RBP eCLIP9.03□□□□□ -0.96
TDP1-203ENST00000393454 JAMLQ86YT9 394 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 RFX6Q8HWS3 928 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 SCN4BQ8IWT1 228 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 CRIPAKQ8N1N5 446 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 CCDC114Q96M63 670 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 PKMYT1Q99640 499 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 DDX23Q9BUQ8 820 aaKnown RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 MAK16Q9BXY0 300 aaKnown RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 GPR62Q9BZJ7 368 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 UBXN6Q9BZV1 441 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 DCLK3Q9C098 648 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ZCWPW1Q9H0M4 648 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 LRRC19Q9H756 370 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 CNGB3Q9NQW8 809 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 HOMER3Q9NSC5 361 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.03□□□□□ -0.96
TDP1-203ENST00000393454 GPATCH2LQ9NWQ4 482 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 MARCH5Q9NX47 278 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ABI2Q9NYB9 513 aaPredicted RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 COX16Q9P0S2 106 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 PCYOX1Q9UHG3 505 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 R3HDM2Q9Y2K5 976 aaKnown RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 TRIM43BA6NCK2 446 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ECEL1O95672 775 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ZBED1O96006 694 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 AMHP03971 560 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 CD48P09326 243 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 CSF2RAP15509 400 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ITGB8P26012 769 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 TNFRSF8P28908 595 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 PTGIRP43119 386 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ALDH7A1P49419 539 aaKnown RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 DAOAP59103 153 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ADCY2Q08462 1091 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ELAVL2Q12926 359 aaKnown RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 KLF1Q13351 362 aaPredicted RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 CUL1Q13616 776 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 RAB41Q5JT25 222 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ZNF280DQ6N043 979 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 HFE2Q6ZVN8 426 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 SND1Q7KZF4 910 aaKnown RBP eCLIP9.03□□□□□ -0.96
TDP1-203ENST00000393454 HDXQ7Z353 690 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 C12orf50Q8NA57 414 aaPredicted RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 TRIM43Q96BQ3 446 aaPredicted RBP9.03□□□□□ -0.96
TDP1-203ENST00000393454 HAUS1Q96CS2 278 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 PGLYRP2Q96PD5 576 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 TBCBQ99426 244 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ERP44Q9BS26 406 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 CSNK1G1Q9HCP0 422 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 PCDH10Q9P2E7 1040 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 NAALADL1Q9UQQ1 740 aa9.03□□□□□ -0.96
TDP1-203ENST00000393454 ABHD14A-ACY1A0A1B0GW23 586 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 C3orf70A6NLC5 250 aaPredicted RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 YJEFN3A6XGL0 299 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 HHLA1C9JL84 531 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 E7ENQ6 273 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 CST8O60676 142 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 DGKIO75912 1065 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 ACRP10323 421 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 FGFR3P22607 806 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 NOS2P35228 1153 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 PTPN7P35236 360 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 ATXN1P54253 815 aaKnown RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 EPHB4P54760 987 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 HDAC4P56524 1084 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 NME3Q13232 169 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 CCNG2Q16589 344 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 NFE2Q16621 373 aaPredicted RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 SLC25A52Q3SY17 297 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 ZC3H12AQ5D1E8 599 aaKnown RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 GSTA5Q7RTV2 222 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 TMCO2Q7Z6W1 182 aaPredicted RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 TMEM173Q86WV6 379 aaPredicted RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 MAP7D3Q8IWC1 876 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 TMEM199Q8N511 208 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 CMASQ8NFW8 434 aaPredicted RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 ATL2Q8NHH9 583 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 AENQ8WTP8 325 aaKnown RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 GRK7Q8WTQ7 553 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 POPDC2Q9HBU9 364 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 FAM114A2Q9NRY5 505 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 FEZ2Q9UHY8 353 aaPredicted RBP9.02□□□□□ -0.97
TDP1-203ENST00000393454 STAP1Q9ULZ2 295 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 SNX24Q9Y343 169 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 VWA8A3KMH1 1905 aa9.02□□□□□ -0.97
TDP1-203ENST00000393454 OR6C75A6NL08 312 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 M0QYT0 321 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 ATP8B1O43520 1251 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 GAS8O95995 478 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 LTFP02788 710 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 NCAM1P13591 858 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 CPB1P15086 417 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 MMRN1Q13201 1228 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 CASP8Q14790 479 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 PPP6R3Q5H9R7 873 aaPredicted RBP9.01□□□□□ -0.97
TDP1-203ENST00000393454 ERMARDQ5T6L9 678 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 SYPL2Q5VXT5 272 aa9.01□□□□□ -0.97
TDP1-203ENST00000393454 STRADAQ7RTN6 431 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms